Merge pull request #415 from chgl/updated-to-hapi-6.1.0

Updated to hapi 6.1.0

Dockerfile

@@ -1,7 +1,7 @@
 FROM maven:3.8-openjdk-17-slim as build-hapi
 WORKDIR /tmp/hapi-fhir-jpaserver-starter
 
-ARG OPENTELEMETRY_JAVA_AGENT_VERSION=1.16.0
+ARG OPENTELEMETRY_JAVA_AGENT_VERSION=1.17.0
 RUN curl -LSsO https://github.com/open-telemetry/opentelemetry-java-instrumentation/releases/download/v${OPENTELEMETRY_JAVA_AGENT_VERSION}/opentelemetry-javaagent.jar
 
 COPY pom.xml .

README.md

@@ -17,9 +17,9 @@ In order to use this sample, you should have:
  - Apache Maven build tool (newest version)
 
 ### or
- - Docker, as the entire project can be built using multistage docker (with both JDK and maven wrapped in docker) or used directly from [Docker Hub](https://hub.docker.com/repository/docker/hapiproject/hapi)
+ - Docker, as the entire project can be built using multistage docker (with both JDK and maven wrapped in docker) or used directly from [Docker Hub](https://hub.docker.com/r/hapiproject/hapi)
 
-## Running via [Docker Hub](https://hub.docker.com/repository/docker/hapiproject/hapi)
+## Running via [Docker Hub](https://hub.docker.com/r/hapiproject/hapi)
 
 Each tagged/released version of `hapi-fhir-jpaserver` is built as a Docker image and published to Docker hub. To run the published Docker image from DockerHub:
 

pom.xml

@@ -14,7 +14,7 @@
     <parent>
         <groupId>ca.uhn.hapi.fhir</groupId>
         <artifactId>hapi-fhir</artifactId>
-        <version>6.0.1</version>
+        <version>6.1.0</version>
     </parent>
 
     <artifactId>hapi-fhir-jpaserver-starter</artifactId>
@@ -196,8 +196,6 @@
         <dependency>
             <groupId>com.h2database</groupId>
             <artifactId>h2</artifactId>
-        <!-- pw: 04.07.22: this is fixed in latest hapi snapshot, can be removed when switchung to hapi 6.1.0-->         
-            <version>2.1.212</version>
         </dependency>
 
         <!-- webjars -->

src/main/java/ca/uhn/fhir/jpa/starter/BaseJpaRestfulServer.java

@@ -418,7 +418,7 @@ public class BaseJpaRestfulServer extends RestfulServer {
       daoConfig.setLastNEnabled(true);
     }
 
-	 daoConfig.setStoreResourceInLuceneIndex(appProperties.getStore_resource_in_lucene_index_enabled());
+	 daoConfig.setStoreResourceInHSearchIndex(appProperties.getStore_resource_in_lucene_index_enabled());
     daoConfig.getModelConfig().setNormalizedQuantitySearchLevel(appProperties.getNormalized_quantity_search_level());
 	 daoConfig.getModelConfig().setIndexOnContainedResources(appProperties.getEnable_index_contained_resource());
   }

src/main/java/ca/uhn/fhir/jpa/starter/EnvironmentHelper.java

@@ -1,7 +1,7 @@
 package ca.uhn.fhir.jpa.starter;
 
 import ca.uhn.fhir.jpa.config.HapiFhirLocalContainerEntityManagerFactoryBean;
-import ca.uhn.fhir.jpa.search.HapiLuceneAnalysisConfigurer;
+import ca.uhn.fhir.jpa.search.HapiHSearchAnalysisConfigurers;
 import ca.uhn.fhir.jpa.search.elastic.ElasticsearchHibernatePropertiesBuilder;
 import org.apache.lucene.util.Version;
 import org.hibernate.cfg.AvailableSettings;
@@ -71,7 +71,8 @@ public class EnvironmentHelper {
 			if (properties.get(BackendSettings.backendKey(BackendSettings.TYPE)).equals(LuceneBackendSettings.TYPE_NAME)) {
 				properties.putIfAbsent(BackendSettings.backendKey(LuceneIndexSettings.DIRECTORY_TYPE), LocalFileSystemDirectoryProvider.NAME);
 				properties.putIfAbsent(BackendSettings.backendKey(LuceneIndexSettings.DIRECTORY_ROOT), "target/lucenefiles");
-				properties.putIfAbsent(BackendSettings.backendKey(LuceneBackendSettings.ANALYSIS_CONFIGURER), HapiLuceneAnalysisConfigurer.class.getName());
+				properties.putIfAbsent(BackendSettings.backendKey(LuceneBackendSettings.ANALYSIS_CONFIGURER),
+					HapiHSearchAnalysisConfigurers.HapiLuceneAnalysisConfigurer.class.getName());
 				properties.putIfAbsent(BackendSettings.backendKey(LuceneBackendSettings.LUCENE_VERSION), Version.LATEST);
 
 			} else if (properties.get(BackendSettings.backendKey(BackendSettings.TYPE)).equals(ElasticsearchBackendSettings.TYPE_NAME)) {
@@ -188,4 +189,4 @@ public class EnvironmentHelper {
 			aBase.put(entry.getKey(), entry.getValue());
 		}
 	}
-}
+}

src/main/java/ca/uhn/fhir/jpa/starter/FhirServerConfigCommon.java

@@ -122,7 +122,7 @@ public class FhirServerConfigCommon {
     }
 
     retVal.setFilterParameterEnabled(appProperties.getFilter_search_enabled());
-	 retVal.setAdvancedLuceneIndexing(appProperties.getAdvanced_lucene_indexing());
+	 retVal.setAdvancedHSearchIndexing(appProperties.getAdvanced_lucene_indexing());
 	 retVal.setTreatBaseUrlsAsLocal(new HashSet<>(appProperties.getLocal_base_urls()));
 
     return retVal;

src/main/java/ca/uhn/fhir/jpa/starter/StarterJpaConfig.java

@@ -10,13 +10,19 @@ import ca.uhn.fhir.jpa.config.util.ResourceCountCacheUtil;
 import ca.uhn.fhir.jpa.config.util.ValidationSupportConfigUtil;
 import ca.uhn.fhir.jpa.dao.FulltextSearchSvcImpl;
 import ca.uhn.fhir.jpa.dao.IFulltextSearchSvc;
+import ca.uhn.fhir.jpa.dao.mdm.MdmLinkDaoJpaImpl;
+import ca.uhn.fhir.jpa.dao.search.HSearchSortHelperImpl;
+import ca.uhn.fhir.jpa.dao.search.IHSearchSortHelper;
 import ca.uhn.fhir.jpa.provider.DaoRegistryResourceSupportedSvc;
 import ca.uhn.fhir.jpa.search.DatabaseBackedPagingProvider;
 import ca.uhn.fhir.jpa.search.IStaleSearchDeletingSvc;
 import ca.uhn.fhir.jpa.search.StaleSearchDeletingSvcImpl;
 import ca.uhn.fhir.jpa.util.ResourceCountCache;
 import ca.uhn.fhir.jpa.validation.JpaValidationSupportChain;
+import ca.uhn.fhir.mdm.dao.IMdmLinkDao;
 import ca.uhn.fhir.rest.api.IResourceSupportedSvc;
+import ca.uhn.fhir.rest.server.util.ISearchParamRegistry;
+
 import org.hl7.fhir.common.hapi.validation.support.CachingValidationSupport;
 import org.springframework.batch.core.configuration.annotation.BatchConfigurer;
 import org.springframework.beans.factory.annotation.Autowired;
@@ -106,4 +112,17 @@ public class StarterJpaConfig {
 		retVal.setEntityManagerFactory(entityManagerFactory);
 		return retVal;
 	}
+
+	@Autowired
+	private ISearchParamRegistry mySearchParamRegistry;
+
+	@Bean
+	public IHSearchSortHelper hSearchSortHelper() {
+		return new HSearchSortHelperImpl(mySearchParamRegistry);
+	}
+
+	@Bean
+	public IMdmLinkDao<?> mdmLinkDao(){
+		return new MdmLinkDaoJpaImpl();
+	}
 }

src/main/resources/application.yaml

@@ -42,7 +42,7 @@ spring:
   ###    These settings will enable fulltext search with lucene
       hibernate.search.enabled: false
   #      hibernate.search.backend.type: lucene
-  #      hibernate.search.backend.analysis.configurer: ca.uhn.fhir.jpa.search.HapiLuceneAnalysisConfigurer
+  #      hibernate.search.backend.analysis.configurer: ca.uhn.fhir.jpa.search.HapiHSearchAnalysisConfigurers$HapiLuceneAnalysisConfigurer
   #      hibernate.search.backend.directory.type: local-filesystem
   #      hibernate.search.backend.directory.root: target/lucenefiles
   #      hibernate.search.backend.lucene_version: lucene_current