Personal-Twin/hapi-fhir-jpaserver-starter
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Updated Helm chart to use image 6.2.1 and latest PostgreSQL (#458)

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chgl
2022-11-24 23:09:24 +01:00
committed by GitHub
parent daea3916ca
commit 05d76c78ad
6 changed files with 21 additions and 17 deletions
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6
charts/hapi-fhir-jpaserver/Chart.lock
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@@ -1,6 +1,6 @@
dependencies: dependencies:
- name: postgresql - name: postgresql
repository: https://charts.bitnami.com/bitnami repository: https://charts.bitnami.com/bitnami
version: 11.8.1 version: 12.1.2
digest: sha256:671325f8b3d0b85183fa241190e72705fb124a41254a5db6445bcc105e1ca7ec digest: sha256:525689611a29f90b0bc8cd674df5d97024c99eda8104216390f6747904fd0208
generated: "2022-08-25T02:14:58.3432514+02:00" generated: "2022-11-21T22:55:45.1699395+01:00"

14
charts/hapi-fhir-jpaserver/Chart.yaml
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@@ -7,17 +7,21 @@ sources:
- https://github.com/hapifhir/hapi-fhir-jpaserver-starter - https://github.com/hapifhir/hapi-fhir-jpaserver-starter
dependencies: dependencies:
- name: postgresql - name: postgresql
version: 11.8.1 version: 12.1.2
repository: https://charts.bitnami.com/bitnami repository: https://charts.bitnami.com/bitnami
condition: postgresql.enabled condition: postgresql.enabled
appVersion: v6.x appVersion: 6.2.1
version: 0.10.1 version: 0.11.0
annotations: annotations:
artifacthub.io/license: Apache-2.0 artifacthub.io/license: Apache-2.0
artifacthub.io/changes: | artifacthub.io/changes: |
# When using the list of objects option the valid supported kinds are # When using the list of objects option the valid supported kinds are
# added, changed, deprecated, removed, fixed, and security. # added, changed, deprecated, removed, fixed, and security.
- kind: changed - kind: changed
description: updated image version to v6.1.0 description: updated HAPI FHIR JPA Server app image version to v6.2.1
- kind: changed - kind: changed
description: added section on configuring the chart for distributed tracing to the README.md description: |
Reduced `startupProbe.initialDelaySeconds` to a more realistic `30` from `60`.
This should allow the server to become ready quicker and recover from failures faster.
- kind: changed
description: "⚠️ BREAKING CHANGE: updated included postgresql chart to v12, which is based on PostgreSQL 15.1"

6
charts/hapi-fhir-jpaserver/README.md
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@@ -1,6 +1,6 @@
# HAPI FHIR JPA Server Starter Helm Chart # HAPI FHIR JPA Server Starter Helm Chart
![Version: 0.10.1](https://img.shields.io/badge/Version-0.10.1-informational?style=flat-square) ![Type: application](https://img.shields.io/badge/Type-application-informational?style=flat-square) ![AppVersion: v6.x](https://img.shields.io/badge/AppVersion-v6.x-informational?style=flat-square) ![Version: 0.11.0](https://img.shields.io/badge/Version-0.11.0-informational?style=flat-square) ![Type: application](https://img.shields.io/badge/Type-application-informational?style=flat-square) ![AppVersion: 6.2.1](https://img.shields.io/badge/AppVersion-6.2.1-informational?style=flat-square)
This helm chart will help you install the HAPI FHIR JPA Server in a Kubernetes environment. This helm chart will help you install the HAPI FHIR JPA Server in a Kubernetes environment.
@@ -32,7 +32,7 @@ helm install --render-subchart-notes hapi-fhir-jpaserver hapifhir/hapi-fhir-jpas
| image.pullPolicy | string | `"IfNotPresent"` | image pullPolicy to use | | image.pullPolicy | string | `"IfNotPresent"` | image pullPolicy to use |
| image.registry | string | `"docker.io"` | registry where the HAPI FHIR server image is hosted | | image.registry | string | `"docker.io"` | registry where the HAPI FHIR server image is hosted |
| image.repository | string | `"hapiproject/hapi"` | the path inside the repository | | image.repository | string | `"hapiproject/hapi"` | the path inside the repository |
| image.tag | string | `"v6.1.0@sha256:253f87bb1f5b7627f8e25f76a4b0aa7a83f31968c6e111ad74d3cc4ad9ae812e"` | the image tag. As of v5.7.0, this is the `distroless` flavor by default, add `-tomcat` to use the Tomcat-based image. | | image.tag | string | `"v6.2.1@sha256:8d1b4c1c8abd613f685267a3dda494d87aba4cff449eed39902a6ece2c086f3c"` | the image tag. As of v5.7.0, this is the `distroless` flavor by default, add `-tomcat` to use the Tomcat-based image. |
| imagePullSecrets | list | `[]` | image pull secrets to use when pulling the image | | imagePullSecrets | list | `[]` | image pull secrets to use when pulling the image |
| ingress.annotations | object | `{}` | provide any additional annotations which may be required. Evaluated as a template. | | ingress.annotations | object | `{}` | provide any additional annotations which may be required. Evaluated as a template. |
| ingress.enabled | bool | `false` | whether to create an Ingress to expose the FHIR server HTTP endpoint | | ingress.enabled | bool | `false` | whether to create an Ingress to expose the FHIR server HTTP endpoint |
@@ -80,7 +80,7 @@ helm install --render-subchart-notes hapi-fhir-jpaserver hapifhir/hapi-fhir-jpas
| service.port | int | `8080` | port where the server will be exposed at | | service.port | int | `8080` | port where the server will be exposed at |
| service.type | string | `"ClusterIP"` | service type | | service.type | string | `"ClusterIP"` | service type |
| startupProbe.failureThreshold | int | `10` | | | startupProbe.failureThreshold | int | `10` | |
| startupProbe.initialDelaySeconds | int | `60` | | | startupProbe.initialDelaySeconds | int | `30` | |
| startupProbe.periodSeconds | int | `30` | | | startupProbe.periodSeconds | int | `30` | |
| startupProbe.successThreshold | int | `1` | | | startupProbe.successThreshold | int | `1` | |
| startupProbe.timeoutSeconds | int | `30` | | | startupProbe.timeoutSeconds | int | `30` | |

2
charts/hapi-fhir-jpaserver/templates/deployment.yaml
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@@ -30,7 +30,7 @@ spec:
{{- toYaml .Values.podSecurityContext | nindent 8 }} {{- toYaml .Values.podSecurityContext | nindent 8 }}
initContainers: initContainers:
- name: wait-for-db-to-be-ready - name: wait-for-db-to-be-ready
image: docker.io/bitnami/postgresql:14.5.0@sha256:4355265e33e9c2a786aa145884d4b36ffd4c41c516b35d60df0b7495141ec738 image: docker.io/bitnami/postgresql:15.1.0-debian-11-r0@sha256:27915588d5203a10a1c23624d9c81644437f33b7c224e25f79bcd9bd09bbb8e2
imagePullPolicy: IfNotPresent imagePullPolicy: IfNotPresent
{{- with .Values.restrictedContainerSecurityContext }} {{- with .Values.restrictedContainerSecurityContext }}
securityContext: securityContext:

6
charts/hapi-fhir-jpaserver/templates/tests/test-endpoints.yaml
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@@ -11,7 +11,7 @@ spec:
restartPolicy: Never restartPolicy: Never
containers: containers:
- name: test-metadata-endpoint - name: test-metadata-endpoint
image: docker.io/curlimages/curl:7.84.0@sha256:5a2a25d96aa941ea2fc47acc50122f7c3d007399a075df61a82d6d2c3a567a2b image: docker.io/curlimages/curl:7.86.0@sha256:cfdeba7f88bb85f6c87f2ec9135115b523a1c24943976a61fbf59c4f2eafd78e
command: ["curl", "--fail-with-body"] command: ["curl", "--fail-with-body"]
args: ["http://{{ include "hapi-fhir-jpaserver.fullname" . }}:{{ .Values.service.port }}/fhir/metadata?_summary=true"] args: ["http://{{ include "hapi-fhir-jpaserver.fullname" . }}:{{ .Values.service.port }}/fhir/metadata?_summary=true"]
{{- with .Values.restrictedContainerSecurityContext }} {{- with .Values.restrictedContainerSecurityContext }}
@@ -32,7 +32,7 @@ spec:
exec: exec:
command: ["true"] command: ["true"]
- name: test-patient-endpoint - name: test-patient-endpoint
image: docker.io/curlimages/curl:7.84.0@sha256:5a2a25d96aa941ea2fc47acc50122f7c3d007399a075df61a82d6d2c3a567a2b image: docker.io/curlimages/curl:7.86.0@sha256:cfdeba7f88bb85f6c87f2ec9135115b523a1c24943976a61fbf59c4f2eafd78e
command: ["curl", "--fail-with-body"] command: ["curl", "--fail-with-body"]
args: ["http://{{ include "hapi-fhir-jpaserver.fullname" . }}:{{ .Values.service.port }}/fhir/Patient?_count=1&_summary=true"] args: ["http://{{ include "hapi-fhir-jpaserver.fullname" . }}:{{ .Values.service.port }}/fhir/Patient?_count=1&_summary=true"]
{{- with .Values.restrictedContainerSecurityContext }} {{- with .Values.restrictedContainerSecurityContext }}
@@ -53,7 +53,7 @@ spec:
exec: exec:
command: ["true"] command: ["true"]
- name: test-metrics-endpoint - name: test-metrics-endpoint
image: docker.io/curlimages/curl:7.84.0@sha256:5a2a25d96aa941ea2fc47acc50122f7c3d007399a075df61a82d6d2c3a567a2b image: docker.io/curlimages/curl:7.86.0@sha256:cfdeba7f88bb85f6c87f2ec9135115b523a1c24943976a61fbf59c4f2eafd78e
command: ["curl", "--fail-with-body"] command: ["curl", "--fail-with-body"]
args: ["http://{{ include "hapi-fhir-jpaserver.fullname" . }}:{{ .Values.metrics.service.port }}/actuator/prometheus"] args: ["http://{{ include "hapi-fhir-jpaserver.fullname" . }}:{{ .Values.metrics.service.port }}/actuator/prometheus"]
{{- with .Values.restrictedContainerSecurityContext }} {{- with .Values.restrictedContainerSecurityContext }}

4
charts/hapi-fhir-jpaserver/values.yaml
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@@ -7,7 +7,7 @@ image:
# -- the path inside the repository # -- the path inside the repository
repository: hapiproject/hapi repository: hapiproject/hapi
# -- the image tag. As of v5.7.0, this is the `distroless` flavor by default, add `-tomcat` to use the Tomcat-based image. # -- the image tag. As of v5.7.0, this is the `distroless` flavor by default, add `-tomcat` to use the Tomcat-based image.
tag: "v6.1.0@sha256:253f87bb1f5b7627f8e25f76a4b0aa7a83f31968c6e111ad74d3cc4ad9ae812e" tag: "v6.2.1@sha256:8d1b4c1c8abd613f685267a3dda494d87aba4cff449eed39902a6ece2c086f3c"
# -- image pullPolicy to use # -- image pullPolicy to use
pullPolicy: IfNotPresent pullPolicy: IfNotPresent
@@ -140,7 +140,7 @@ readinessProbe:
startupProbe: startupProbe:
failureThreshold: 10 failureThreshold: 10
initialDelaySeconds: 60 initialDelaySeconds: 30
periodSeconds: 30 periodSeconds: 30
successThreshold: 1 successThreshold: 1
timeoutSeconds: 30 timeoutSeconds: 30