just need to merge the email TLS

This commit is contained in:
Ken Stevens
2020-05-27 17:04:39 -04:00
parent f598dd8e1f
commit 0c9b9f7f77
10 changed files with 248 additions and 181 deletions

View File

@@ -2,6 +2,9 @@ package ca.uhn.fhir.jpa.starter;
import ca.uhn.fhir.context.FhirContext;
import ca.uhn.fhir.context.FhirVersionEnum;
import ca.uhn.fhir.empi.provider.EmpiProviderDstu3;
import ca.uhn.fhir.empi.provider.EmpiProviderR4;
import ca.uhn.fhir.empi.rules.config.EmpiSettings;
import ca.uhn.fhir.interceptor.api.IInterceptorBroadcaster;
import ca.uhn.fhir.interceptor.api.IInterceptorService;
import ca.uhn.fhir.jpa.api.config.DaoConfig;
@@ -10,6 +13,8 @@ import ca.uhn.fhir.jpa.api.dao.IFhirSystemDao;
import ca.uhn.fhir.jpa.binstore.BinaryStorageInterceptor;
import ca.uhn.fhir.jpa.bulk.BulkDataExportProvider;
import ca.uhn.fhir.jpa.interceptor.CascadingDeleteInterceptor;
import ca.uhn.fhir.jpa.model.config.PartitionSettings;
import ca.uhn.fhir.jpa.partition.PartitionManagementProvider;
import ca.uhn.fhir.jpa.provider.GraphQLProvider;
import ca.uhn.fhir.jpa.provider.JpaConformanceProviderDstu2;
import ca.uhn.fhir.jpa.provider.JpaSystemProviderDstu2;
@@ -37,11 +42,9 @@ import ca.uhn.fhir.rest.server.interceptor.ResponseValidatingInterceptor;
import ca.uhn.fhir.rest.server.provider.ResourceProviderFactory;
import ca.uhn.fhir.validation.IValidatorModule;
import ca.uhn.fhir.validation.ResultSeverityEnum;
import java.util.HashSet;
import java.util.TreeSet;
import org.hl7.fhir.dstu3.model.Bundle;
import org.hl7.fhir.r4.model.Bundle.BundleType;
import org.hl7.fhir.dstu3.model.Meta;
import org.hl7.fhir.r4.model.Bundle.BundleType;
import org.springframework.context.ApplicationContext;
import org.springframework.http.HttpHeaders;
import org.springframework.web.cors.CorsConfiguration;
@@ -49,7 +52,9 @@ import org.springframework.web.cors.CorsConfiguration;
import javax.servlet.ServletException;
import java.util.Arrays;
import java.util.Collections;
import java.util.HashSet;
import java.util.Set;
import java.util.TreeSet;
public class JpaRestfulServer extends RestfulServer {
@@ -65,12 +70,12 @@ public class JpaRestfulServer extends RestfulServer {
* specified in the properties file.
*/
ApplicationContext appCtx = (ApplicationContext) getServletContext()
.getAttribute("org.springframework.web.context.WebApplicationContext.ROOT");
.getAttribute("org.springframework.web.context.WebApplicationContext.ROOT");
// Customize supported resource types
Set<String> supportedResourceTypes = HapiProperties.getSupportedResourceTypes();
if (!supportedResourceTypes.isEmpty() && !supportedResourceTypes.contains("SearchParameter")) {
supportedResourceTypes.add("SearchParameter");
supportedResourceTypes.add("SearchParameter");
}
if (!supportedResourceTypes.isEmpty()) {
@@ -115,30 +120,30 @@ public class JpaRestfulServer extends RestfulServer {
*/
if (fhirVersion == FhirVersionEnum.DSTU2) {
IFhirSystemDao<ca.uhn.fhir.model.dstu2.resource.Bundle, MetaDt> systemDao = appCtx
.getBean("mySystemDaoDstu2", IFhirSystemDao.class);
.getBean("mySystemDaoDstu2", IFhirSystemDao.class);
JpaConformanceProviderDstu2 confProvider = new JpaConformanceProviderDstu2(this, systemDao,
appCtx.getBean(DaoConfig.class));
appCtx.getBean(DaoConfig.class));
confProvider.setImplementationDescription("HAPI FHIR DSTU2 Server");
setServerConformanceProvider(confProvider);
} else if (fhirVersion == FhirVersionEnum.DSTU3) {
IFhirSystemDao<Bundle, Meta> systemDao = appCtx
.getBean("mySystemDaoDstu3", IFhirSystemDao.class);
.getBean("mySystemDaoDstu3", IFhirSystemDao.class);
JpaConformanceProviderDstu3 confProvider = new JpaConformanceProviderDstu3(this, systemDao,
appCtx.getBean(DaoConfig.class), appCtx.getBean(ISearchParamRegistry.class));
appCtx.getBean(DaoConfig.class), appCtx.getBean(ISearchParamRegistry.class));
confProvider.setImplementationDescription("HAPI FHIR DSTU3 Server");
setServerConformanceProvider(confProvider);
} else if (fhirVersion == FhirVersionEnum.R4) {
IFhirSystemDao<org.hl7.fhir.r4.model.Bundle, org.hl7.fhir.r4.model.Meta> systemDao = appCtx
.getBean("mySystemDaoR4", IFhirSystemDao.class);
.getBean("mySystemDaoR4", IFhirSystemDao.class);
JpaConformanceProviderR4 confProvider = new JpaConformanceProviderR4(this, systemDao,
appCtx.getBean(DaoConfig.class), appCtx.getBean(ISearchParamRegistry.class));
appCtx.getBean(DaoConfig.class), appCtx.getBean(ISearchParamRegistry.class));
confProvider.setImplementationDescription("HAPI FHIR R4 Server");
setServerConformanceProvider(confProvider);
} else if (fhirVersion == FhirVersionEnum.R5) {
IFhirSystemDao<org.hl7.fhir.r5.model.Bundle, org.hl7.fhir.r5.model.Meta> systemDao = appCtx
.getBean("mySystemDaoR5", IFhirSystemDao.class);
.getBean("mySystemDaoR5", IFhirSystemDao.class);
JpaConformanceProviderR5 confProvider = new JpaConformanceProviderR5(this, systemDao,
appCtx.getBean(DaoConfig.class), appCtx.getBean(ISearchParamRegistry.class));
appCtx.getBean(DaoConfig.class), appCtx.getBean(ISearchParamRegistry.class));
confProvider.setImplementationDescription("HAPI FHIR R5 Server");
setServerConformanceProvider(confProvider);
} else {
@@ -219,7 +224,7 @@ public class JpaRestfulServer extends RestfulServer {
// manual triggering of a subscription delivery, enable this provider
if (false) { // <-- DISABLED RIGHT NOW
SubscriptionTriggeringProvider retriggeringProvider = appCtx
.getBean(SubscriptionTriggeringProvider.class);
.getBean(SubscriptionTriggeringProvider.class);
registerProvider(retriggeringProvider);
}
@@ -245,7 +250,7 @@ public class JpaRestfulServer extends RestfulServer {
config.addExposedHeader("Location");
config.addExposedHeader("Content-Location");
config.setAllowedMethods(
Arrays.asList("GET", "POST", "PUT", "DELETE", "OPTIONS", "PATCH", "HEAD"));
Arrays.asList("GET", "POST", "PUT", "DELETE", "OPTIONS", "PATCH", "HEAD"));
config.setAllowCredentials(HapiProperties.getCorsAllowedCredentials());
// Create the interceptor and register it
@@ -256,13 +261,13 @@ public class JpaRestfulServer extends RestfulServer {
// If subscriptions are enabled, we want to register the interceptor that
// will activate them and match results against them
if (HapiProperties.getSubscriptionWebsocketEnabled() ||
HapiProperties.getSubscriptionEmailEnabled() ||
HapiProperties.getSubscriptionRestHookEnabled()) {
HapiProperties.getSubscriptionEmailEnabled() ||
HapiProperties.getSubscriptionRestHookEnabled()) {
// Loads subscription interceptors (SubscriptionActivatingInterceptor, SubscriptionMatcherInterceptor)
// with activation of scheduled subscription
SubscriptionSubmitInterceptorLoader subscriptionInterceptorLoader = appCtx
.getBean(SubscriptionSubmitInterceptorLoader.class);
.getBean(SubscriptionSubmitInterceptorLoader.class);
subscriptionInterceptorLoader.start();
// Subscription debug logging
@@ -275,43 +280,19 @@ public class JpaRestfulServer extends RestfulServer {
IInterceptorBroadcaster interceptorBroadcaster = appCtx.getBean(IInterceptorBroadcaster.class);
if (HapiProperties.getAllowCascadingDeletes()) {
CascadingDeleteInterceptor cascadingDeleteInterceptor = new CascadingDeleteInterceptor(getFhirContext(),
daoRegistry, interceptorBroadcaster);
daoRegistry, interceptorBroadcaster);
getInterceptorService().registerInterceptor(cascadingDeleteInterceptor);
}
// Binary Storage
if (HapiProperties.isBinaryStorageEnabled()) {
BinaryStorageInterceptor binaryStorageInterceptor = appCtx
.getBean(BinaryStorageInterceptor.class);
.getBean(BinaryStorageInterceptor.class);
getInterceptorService().registerInterceptor(binaryStorageInterceptor);
}
// Validation
IValidatorModule validatorModule;
// FIXME KHS
/*
switch (fhirVersion) {
case DSTU2:
validatorModule = appCtx.getBean("myInstanceValidatorDstu2", IValidatorModule.class);
break;
case DSTU3:
validatorModule = appCtx.getBean("myInstanceValidatorDstu3", IValidatorModule.class);
break;
case R4:
validatorModule = appCtx.getBean("myInstanceValidatorR4", IValidatorModule.class);
break;
case R5:
validatorModule = appCtx.getBean("myInstanceValidatorR5", IValidatorModule.class);
break;
// These versions are not supported by HAPI FHIR JPA
case DSTU2_HL7ORG:
case DSTU2_1:
default:
validatorModule = null;
break;
}
*/
validatorModule = appCtx.getBean(IValidatorModule.class);
IValidatorModule validatorModule = appCtx.getBean(IValidatorModule.class);
if (validatorModule != null) {
if (HapiProperties.getValidateRequestsEnabled()) {
RequestValidatingInterceptor interceptor = new RequestValidatingInterceptor();
@@ -343,19 +324,21 @@ public class JpaRestfulServer extends RestfulServer {
});
DaoConfig config = appCtx.getBean(DaoConfig.class);
config.setBundleTypesAllowedForStorage(
Collections.unmodifiableSet(new TreeSet<>(allowedBundleTypes)));
}
// Bulk Export
if (HapiProperties.getBulkExportEnabled()) {
registerProvider(appCtx.getBean(BulkDataExportProvider.class));
}
if (HapiProperties.getEmpiEnabled()) {
// FIXME KHS
Collections.unmodifiableSet(new TreeSet<>(allowedBundleTypes)));
}
// Bulk Export
if (HapiProperties.getBulkExportEnabled()) {
registerProvider(appCtx.getBean(BulkDataExportProvider.class));
}
if (HapiProperties.getPartitioningEnabled()) {
PartitionSettings partitionSettings = appCtx.getBean(PartitionSettings.class);
partitionSettings.setPartitioningEnabled(true);
PartitionSettings.CrossPartitionReferenceMode mode = PartitionSettings.CrossPartitionReferenceMode.valueOf(HapiProperties.getPartitioningCrossPartitionReferenceMode());
partitionSettings.setAllowReferencesAcrossPartitions(mode);
partitionSettings.setIncludePartitionInSearchHashes(HapiProperties.getIncludePartitionInSearchHashes());
registerProvider(appCtx.getBean(PartitionManagementProvider.class));
}
}
}