just need to merge the email TLS
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@@ -2,6 +2,9 @@ package ca.uhn.fhir.jpa.starter;
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import ca.uhn.fhir.context.FhirContext;
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import ca.uhn.fhir.context.FhirVersionEnum;
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import ca.uhn.fhir.empi.provider.EmpiProviderDstu3;
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import ca.uhn.fhir.empi.provider.EmpiProviderR4;
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import ca.uhn.fhir.empi.rules.config.EmpiSettings;
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import ca.uhn.fhir.interceptor.api.IInterceptorBroadcaster;
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import ca.uhn.fhir.interceptor.api.IInterceptorService;
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import ca.uhn.fhir.jpa.api.config.DaoConfig;
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@@ -10,6 +13,8 @@ import ca.uhn.fhir.jpa.api.dao.IFhirSystemDao;
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import ca.uhn.fhir.jpa.binstore.BinaryStorageInterceptor;
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import ca.uhn.fhir.jpa.bulk.BulkDataExportProvider;
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import ca.uhn.fhir.jpa.interceptor.CascadingDeleteInterceptor;
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import ca.uhn.fhir.jpa.model.config.PartitionSettings;
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import ca.uhn.fhir.jpa.partition.PartitionManagementProvider;
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import ca.uhn.fhir.jpa.provider.GraphQLProvider;
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import ca.uhn.fhir.jpa.provider.JpaConformanceProviderDstu2;
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import ca.uhn.fhir.jpa.provider.JpaSystemProviderDstu2;
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@@ -37,11 +42,9 @@ import ca.uhn.fhir.rest.server.interceptor.ResponseValidatingInterceptor;
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import ca.uhn.fhir.rest.server.provider.ResourceProviderFactory;
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import ca.uhn.fhir.validation.IValidatorModule;
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import ca.uhn.fhir.validation.ResultSeverityEnum;
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import java.util.HashSet;
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import java.util.TreeSet;
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import org.hl7.fhir.dstu3.model.Bundle;
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import org.hl7.fhir.r4.model.Bundle.BundleType;
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import org.hl7.fhir.dstu3.model.Meta;
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import org.hl7.fhir.r4.model.Bundle.BundleType;
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import org.springframework.context.ApplicationContext;
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import org.springframework.http.HttpHeaders;
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import org.springframework.web.cors.CorsConfiguration;
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@@ -49,7 +52,9 @@ import org.springframework.web.cors.CorsConfiguration;
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import javax.servlet.ServletException;
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import java.util.Arrays;
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import java.util.Collections;
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import java.util.HashSet;
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import java.util.Set;
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import java.util.TreeSet;
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public class JpaRestfulServer extends RestfulServer {
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@@ -65,12 +70,12 @@ public class JpaRestfulServer extends RestfulServer {
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* specified in the properties file.
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*/
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ApplicationContext appCtx = (ApplicationContext) getServletContext()
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.getAttribute("org.springframework.web.context.WebApplicationContext.ROOT");
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.getAttribute("org.springframework.web.context.WebApplicationContext.ROOT");
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// Customize supported resource types
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Set<String> supportedResourceTypes = HapiProperties.getSupportedResourceTypes();
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if (!supportedResourceTypes.isEmpty() && !supportedResourceTypes.contains("SearchParameter")) {
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supportedResourceTypes.add("SearchParameter");
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supportedResourceTypes.add("SearchParameter");
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}
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if (!supportedResourceTypes.isEmpty()) {
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@@ -115,30 +120,30 @@ public class JpaRestfulServer extends RestfulServer {
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*/
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if (fhirVersion == FhirVersionEnum.DSTU2) {
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IFhirSystemDao<ca.uhn.fhir.model.dstu2.resource.Bundle, MetaDt> systemDao = appCtx
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.getBean("mySystemDaoDstu2", IFhirSystemDao.class);
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.getBean("mySystemDaoDstu2", IFhirSystemDao.class);
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JpaConformanceProviderDstu2 confProvider = new JpaConformanceProviderDstu2(this, systemDao,
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appCtx.getBean(DaoConfig.class));
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appCtx.getBean(DaoConfig.class));
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confProvider.setImplementationDescription("HAPI FHIR DSTU2 Server");
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setServerConformanceProvider(confProvider);
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} else if (fhirVersion == FhirVersionEnum.DSTU3) {
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IFhirSystemDao<Bundle, Meta> systemDao = appCtx
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.getBean("mySystemDaoDstu3", IFhirSystemDao.class);
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.getBean("mySystemDaoDstu3", IFhirSystemDao.class);
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JpaConformanceProviderDstu3 confProvider = new JpaConformanceProviderDstu3(this, systemDao,
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appCtx.getBean(DaoConfig.class), appCtx.getBean(ISearchParamRegistry.class));
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appCtx.getBean(DaoConfig.class), appCtx.getBean(ISearchParamRegistry.class));
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confProvider.setImplementationDescription("HAPI FHIR DSTU3 Server");
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setServerConformanceProvider(confProvider);
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} else if (fhirVersion == FhirVersionEnum.R4) {
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IFhirSystemDao<org.hl7.fhir.r4.model.Bundle, org.hl7.fhir.r4.model.Meta> systemDao = appCtx
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.getBean("mySystemDaoR4", IFhirSystemDao.class);
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.getBean("mySystemDaoR4", IFhirSystemDao.class);
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JpaConformanceProviderR4 confProvider = new JpaConformanceProviderR4(this, systemDao,
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appCtx.getBean(DaoConfig.class), appCtx.getBean(ISearchParamRegistry.class));
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appCtx.getBean(DaoConfig.class), appCtx.getBean(ISearchParamRegistry.class));
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confProvider.setImplementationDescription("HAPI FHIR R4 Server");
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setServerConformanceProvider(confProvider);
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} else if (fhirVersion == FhirVersionEnum.R5) {
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IFhirSystemDao<org.hl7.fhir.r5.model.Bundle, org.hl7.fhir.r5.model.Meta> systemDao = appCtx
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.getBean("mySystemDaoR5", IFhirSystemDao.class);
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.getBean("mySystemDaoR5", IFhirSystemDao.class);
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JpaConformanceProviderR5 confProvider = new JpaConformanceProviderR5(this, systemDao,
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appCtx.getBean(DaoConfig.class), appCtx.getBean(ISearchParamRegistry.class));
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appCtx.getBean(DaoConfig.class), appCtx.getBean(ISearchParamRegistry.class));
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confProvider.setImplementationDescription("HAPI FHIR R5 Server");
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setServerConformanceProvider(confProvider);
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} else {
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@@ -219,7 +224,7 @@ public class JpaRestfulServer extends RestfulServer {
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// manual triggering of a subscription delivery, enable this provider
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if (false) { // <-- DISABLED RIGHT NOW
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SubscriptionTriggeringProvider retriggeringProvider = appCtx
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.getBean(SubscriptionTriggeringProvider.class);
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.getBean(SubscriptionTriggeringProvider.class);
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registerProvider(retriggeringProvider);
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}
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@@ -245,7 +250,7 @@ public class JpaRestfulServer extends RestfulServer {
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config.addExposedHeader("Location");
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config.addExposedHeader("Content-Location");
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config.setAllowedMethods(
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Arrays.asList("GET", "POST", "PUT", "DELETE", "OPTIONS", "PATCH", "HEAD"));
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Arrays.asList("GET", "POST", "PUT", "DELETE", "OPTIONS", "PATCH", "HEAD"));
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config.setAllowCredentials(HapiProperties.getCorsAllowedCredentials());
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// Create the interceptor and register it
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@@ -256,13 +261,13 @@ public class JpaRestfulServer extends RestfulServer {
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// If subscriptions are enabled, we want to register the interceptor that
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// will activate them and match results against them
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if (HapiProperties.getSubscriptionWebsocketEnabled() ||
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HapiProperties.getSubscriptionEmailEnabled() ||
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HapiProperties.getSubscriptionRestHookEnabled()) {
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HapiProperties.getSubscriptionEmailEnabled() ||
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HapiProperties.getSubscriptionRestHookEnabled()) {
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// Loads subscription interceptors (SubscriptionActivatingInterceptor, SubscriptionMatcherInterceptor)
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// with activation of scheduled subscription
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SubscriptionSubmitInterceptorLoader subscriptionInterceptorLoader = appCtx
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.getBean(SubscriptionSubmitInterceptorLoader.class);
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.getBean(SubscriptionSubmitInterceptorLoader.class);
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subscriptionInterceptorLoader.start();
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// Subscription debug logging
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@@ -275,43 +280,19 @@ public class JpaRestfulServer extends RestfulServer {
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IInterceptorBroadcaster interceptorBroadcaster = appCtx.getBean(IInterceptorBroadcaster.class);
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if (HapiProperties.getAllowCascadingDeletes()) {
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CascadingDeleteInterceptor cascadingDeleteInterceptor = new CascadingDeleteInterceptor(getFhirContext(),
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daoRegistry, interceptorBroadcaster);
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daoRegistry, interceptorBroadcaster);
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getInterceptorService().registerInterceptor(cascadingDeleteInterceptor);
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}
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// Binary Storage
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if (HapiProperties.isBinaryStorageEnabled()) {
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BinaryStorageInterceptor binaryStorageInterceptor = appCtx
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.getBean(BinaryStorageInterceptor.class);
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.getBean(BinaryStorageInterceptor.class);
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getInterceptorService().registerInterceptor(binaryStorageInterceptor);
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}
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// Validation
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IValidatorModule validatorModule;
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// FIXME KHS
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/*
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switch (fhirVersion) {
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case DSTU2:
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validatorModule = appCtx.getBean("myInstanceValidatorDstu2", IValidatorModule.class);
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break;
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case DSTU3:
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validatorModule = appCtx.getBean("myInstanceValidatorDstu3", IValidatorModule.class);
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break;
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case R4:
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validatorModule = appCtx.getBean("myInstanceValidatorR4", IValidatorModule.class);
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break;
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case R5:
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validatorModule = appCtx.getBean("myInstanceValidatorR5", IValidatorModule.class);
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break;
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// These versions are not supported by HAPI FHIR JPA
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case DSTU2_HL7ORG:
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case DSTU2_1:
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default:
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validatorModule = null;
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break;
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}
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*/
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validatorModule = appCtx.getBean(IValidatorModule.class);
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IValidatorModule validatorModule = appCtx.getBean(IValidatorModule.class);
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if (validatorModule != null) {
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if (HapiProperties.getValidateRequestsEnabled()) {
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RequestValidatingInterceptor interceptor = new RequestValidatingInterceptor();
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@@ -343,19 +324,21 @@ public class JpaRestfulServer extends RestfulServer {
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});
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DaoConfig config = appCtx.getBean(DaoConfig.class);
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config.setBundleTypesAllowedForStorage(
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Collections.unmodifiableSet(new TreeSet<>(allowedBundleTypes)));
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}
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// Bulk Export
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if (HapiProperties.getBulkExportEnabled()) {
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registerProvider(appCtx.getBean(BulkDataExportProvider.class));
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}
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if (HapiProperties.getEmpiEnabled()) {
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// FIXME KHS
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Collections.unmodifiableSet(new TreeSet<>(allowedBundleTypes)));
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}
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// Bulk Export
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if (HapiProperties.getBulkExportEnabled()) {
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registerProvider(appCtx.getBean(BulkDataExportProvider.class));
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}
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if (HapiProperties.getPartitioningEnabled()) {
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PartitionSettings partitionSettings = appCtx.getBean(PartitionSettings.class);
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partitionSettings.setPartitioningEnabled(true);
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PartitionSettings.CrossPartitionReferenceMode mode = PartitionSettings.CrossPartitionReferenceMode.valueOf(HapiProperties.getPartitioningCrossPartitionReferenceMode());
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partitionSettings.setAllowReferencesAcrossPartitions(mode);
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partitionSettings.setIncludePartitionInSearchHashes(HapiProperties.getIncludePartitionInSearchHashes());
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registerProvider(appCtx.getBean(PartitionManagementProvider.class));
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}
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}
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}
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