Personal-Twin/hapi-fhir-jpaserver-starter
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configure caregaps operation and properties

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This commit is contained in:
justin.mckelvy
2023-06-30 14:53:51 -06:00
parent 29580e5501
commit 26662c2476
7 changed files with 154143 additions and 37 deletions
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53
src/main/java/ca/uhn/fhir/jpa/starter/AppProperties.java
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@@ -6,6 +6,7 @@ import java.util.List;
import java.util.Map;
import java.util.Objects;
import ca.uhn.fhir.cr.config.CrProperties;
import org.cqframework.cql.cql2elm.CqlCompilerException;
import org.cqframework.cql.cql2elm.CqlTranslator;
import org.cqframework.cql.cql2elm.CqlTranslatorOptions;
@@ -28,58 +29,36 @@ import ca.uhn.fhir.rest.api.EncodingEnum;
@Configuration
@EnableConfigurationProperties
public class AppProperties {
//cql settings
private CqlEngineOptions cqlEngineOptions = CqlEngineOptions.defaultOptions();
private Boolean cql_use_embedded_libraries = true;
private Boolean cql_runtime_debug_logging_enabled = false;
private Boolean cql_runtime_enable_validation = false;
private Boolean cql_runtime_enable_expression_caching = false;
private Boolean cql_compiler_validate_units = true;
private Boolean cql_compiler_verify_only = false;
private String cql_compiler_compatibility_level = "1.5";
private CqlCompilerException.ErrorSeverity cql_compiler_error_level = CqlCompilerException.ErrorSeverity.Info;
private LibraryBuilder.SignatureLevel cql_compiler_signature_level = LibraryBuilder.SignatureLevel.All;
private Boolean cql_compiler_analyze_data_requirements = false;
private Boolean cql_compiler_collapse_data_requirements = false;
private CqlTranslator.Format cql_compiler_translator_format = CqlTranslator.Format.JSON;
private Boolean cql_compiler_enable_date_range_optimization = false;
private Boolean cql_compiler_enable_annotations = false;
private Boolean cql_compiler_enable_locators = false;
private Boolean cql_compiler_enable_results_type = false;
private Boolean cql_compiler_enable_detailed_errors = false;
private Boolean cql_compiler_disable_list_traversal = false;
private Boolean cql_compiler_disable_list_demotion = false;
private Boolean cql_compiler_disable_list_promotion = false;
private Boolean cql_compiler_enable_interval_demotion = false;
private Boolean cql_compiler_enable_interval_promotion = false;
private Boolean cql_compiler_disable_method_invocation = false;
private Boolean cql_compiler_require_from_keyword = false;
private Boolean cql_compiler_disable_default_model_info_load = false;
// private CqlEngineOptions cqlEngineOptions =
// CqlEngineOptions.defaultOptions();
// private CqlTranslatorOptions cqlTranslatorOptions =
// CqlTranslatorOptions.defaultOptions();
// Care-gaps Settings
private String caregaps_reporter = "default";
private String caregaps_section_author = "default";
private Boolean cr_enabled = false;
private Boolean ips_enabled = false;
private Boolean openapi_enabled = false;
@@ -122,7 +101,6 @@ public class AppProperties {
private List<String> supported_resource_types = new ArrayList<>();
private List<Bundle.BundleType> allowed_bundle_types = null;
private Boolean narrative_enabled = true;
private Validation validation = new Validation();
private Map<String, Tester> tester = new HashMap<>();
private Logger logger = new Logger();
@@ -132,7 +110,6 @@ public class AppProperties {
private Boolean install_transitive_ig_dependencies = true;
private Boolean reload_existing_implementationguides = false;
private Map<String, ImplementationGuide> implementationGuides = null;
private String staticLocation = null;
private Boolean lastn_enabled = false;
@@ -460,7 +437,27 @@ public class AppProperties {
public void setCr_enabled(Boolean cr_enabled) {
this.cr_enabled = cr_enabled;
}
public String getCareGapsReporter() {
return caregaps_reporter;
}
public String getCareGapsSectionAuthor() {
return caregaps_section_author;
}
public void setCareGapsSectionAuthor(String theCareGapsSectionAuthor) {this.caregaps_section_author = theCareGapsSectionAuthor;}
public void setCareGapsReporter(String theCareGapsReporter) {
this.caregaps_reporter = theCareGapsReporter;
}
public CrProperties.MeasureProperties getMeasureProperties(){
var measureProperties = new CrProperties.MeasureProperties();
var measureReportConfiguration = new CrProperties.MeasureProperties.MeasureReportConfiguration();
measureReportConfiguration.setCareGapsReporter(this.getCareGapsReporter());
measureReportConfiguration.setCareGapsCompositionSectionAuthor(this.getCareGapsSectionAuthor());
measureProperties.setMeasureReportConfiguration(measureReportConfiguration);
return measureProperties;
}
public Boolean getIps_enabled() {
return ips_enabled;
}

6
src/main/java/ca/uhn/fhir/jpa/starter/cr/StarterCrDstu3Config.java
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@@ -3,6 +3,7 @@ package ca.uhn.fhir.jpa.starter.cr;
import ca.uhn.fhir.context.FhirContext;
import ca.uhn.fhir.context.FhirVersionEnum;
import ca.uhn.fhir.cr.config.CrDstu3Config;
import ca.uhn.fhir.cr.config.CrProperties;
import ca.uhn.fhir.cr.dstu3.IActivityDefinitionProcessorFactory;
import ca.uhn.fhir.cr.dstu3.IPlanDefinitionProcessorFactory;
import ca.uhn.fhir.cr.dstu3.IQuestionnaireProcessorFactory;
@@ -99,6 +100,11 @@ public class StarterCrDstu3Config {
return theAppProperties.getCqlOptions();
}
@Primary
@Bean
public CrProperties.MeasureProperties measureProperties(AppProperties theAppProperties) {
return theAppProperties.getMeasureProperties();
}
@Primary
@Bean
public CqlTranslatorOptions cqlTranslatorOptions(FhirContext theFhirContext, AppProperties theAppProperties) {

30
src/main/java/ca/uhn/fhir/jpa/starter/cr/StarterCrR4Config.java
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@@ -4,19 +4,24 @@ import ca.uhn.fhir.IHapiBootOrder;
import ca.uhn.fhir.context.FhirContext;
import ca.uhn.fhir.context.FhirVersionEnum;
import ca.uhn.fhir.cr.config.CrProperties;
import ca.uhn.fhir.cr.config.CrR4Config;
import ca.uhn.fhir.cr.r4.IActivityDefinitionProcessorFactory;
import ca.uhn.fhir.cr.r4.IPlanDefinitionProcessorFactory;
import ca.uhn.fhir.cr.r4.IQuestionnaireProcessorFactory;
import ca.uhn.fhir.cr.r4.IQuestionnaireResponseProcessorFactory;
import ca.uhn.fhir.cr.r4.activitydefinition.ActivityDefinitionOperationsProvider;
import ca.uhn.fhir.cr.r4.measure.CareGapsOperationProvider;
import ca.uhn.fhir.cr.r4.measure.CareGapsService;
import ca.uhn.fhir.cr.r4.plandefinition.PlanDefinitionOperationsProvider;
import ca.uhn.fhir.cr.r4.questionnaire.QuestionnaireOperationsProvider;
import ca.uhn.fhir.cr.r4.questionnaireresponse.QuestionnaireResponseOperationsProvider;
import ca.uhn.fhir.jpa.starter.AppProperties;
import ca.uhn.fhir.jpa.starter.annotations.OnR4Condition;
import ca.uhn.fhir.rest.api.server.RequestDetails;
import ca.uhn.fhir.rest.server.RestfulServer;
import ca.uhn.fhir.rest.server.provider.ResourceProviderFactory;
import org.apache.commons.lang3.StringUtils;
import org.cqframework.cql.cql2elm.CqlTranslatorOptions;
import org.opencds.cqf.cql.evaluator.CqlOptions;
import org.opencds.cqf.cql.evaluator.activitydefinition.r4.ActivityDefinitionProcessor;
@@ -28,6 +33,8 @@ import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
import org.springframework.context.annotation.*;
import java.util.function.Function;
@Configuration
@Conditional({ OnR4Condition.class, CrConfigCondition.class })
@Import({ CrR4Config.class })
@@ -102,6 +109,29 @@ public class StarterCrR4Config {
return theAppProperties.getCqlOptions();
}
@Primary
@Bean
public CrProperties.MeasureProperties measureProperties(AppProperties theAppProperties) {
return theAppProperties.getMeasureProperties();
}
@Primary
@Bean
CareGapsOperationProvider careGapsOperationProvider(Function<RequestDetails, CareGapsService> r4CareGapsServiceFactory, AppProperties theAppProperties) {
if(StringUtils.isBlank(theAppProperties.getCareGapsReporter()) || StringUtils.isBlank(theAppProperties.getCareGapsSectionAuthor())){
throw new RuntimeException("Configuration failed to register reporter or author properties for running care gaps functionality");
}
Function<RequestDetails, CareGapsService> careGapsServiceFunction = r4CareGapsServiceFactory.andThen(careGapsService -> {
var measureReportConfiguration = new CrProperties.MeasureProperties.MeasureReportConfiguration();
measureReportConfiguration.setCareGapsReporter(theAppProperties.getCareGapsReporter());
measureReportConfiguration.setCareGapsCompositionSectionAuthor(theAppProperties.getCareGapsSectionAuthor());
careGapsService.getCrProperties().getMeasureProperties().setMeasureReportConfiguration(measureReportConfiguration);
return careGapsService;
});
CareGapsOperationProvider careGapsOperationProvider = new CareGapsOperationProvider(careGapsServiceFunction);
return careGapsOperationProvider;
}
@Primary
@Bean
public CqlTranslatorOptions cqlTranslatorOptions(FhirContext theFhirContext, AppProperties theAppProperties) {