Personal-Twin/hapi-fhir-jpaserver-starter
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Compile fixes

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This commit is contained in:
jamesagnew
2021-05-19 08:45:03 -04:00
parent a452286b5d
commit 415f2461e8
4 changed files with 360 additions and 364 deletions
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3
pom.xml
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@@ -14,8 +14,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir</artifactId>
<!-- FIMXME KBD Change this to 5.3.0 BEFORE merging this code to master ! -->
<version>5.4.0-PRE2-SNAPSHOT</version>
<version>5.4.0</version>
</parent>
<artifactId>hapi-fhir-jpaserver-starter</artifactId>

6
src/main/java/ca/uhn/fhir/jpa/mdm/MdmConfig.java
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@@ -7,7 +7,7 @@ import ca.uhn.fhir.jpa.starter.AppProperties;
import ca.uhn.fhir.mdm.api.IMdmSettings;
import ca.uhn.fhir.mdm.rules.config.MdmRuleValidator;
import ca.uhn.fhir.mdm.rules.config.MdmSettings;
import ca.uhn.fhir.rest.server.util.ISearchParamRetriever;
import ca.uhn.fhir.rest.server.util.ISearchParamRegistry;
import com.google.common.base.Charsets;
import org.apache.commons.io.IOUtils;
import org.springframework.beans.factory.annotation.Autowired;
@@ -30,8 +30,8 @@ import java.io.IOException;
public class MdmConfig {
@Bean
MdmRuleValidator mdmRuleValidator(FhirContext theFhirContext, ISearchParamRetriever theSearchParamRetriever) {
return new MdmRuleValidator(theFhirContext, theSearchParamRetriever);
MdmRuleValidator mdmRuleValidator(FhirContext theFhirContext, ISearchParamRegistry theSearchParamRegistry) {
return new MdmRuleValidator(theFhirContext, theSearchParamRegistry);
}
@Bean

63
src/main/java/ca/uhn/fhir/jpa/starter/BaseJpaRestfulServer.java
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@@ -2,6 +2,7 @@ package ca.uhn.fhir.jpa.starter;
import ca.uhn.fhir.context.FhirContext;
import ca.uhn.fhir.context.FhirVersionEnum;
import ca.uhn.fhir.context.support.IValidationSupport;
import ca.uhn.fhir.cql.common.provider.CqlProviderLoader;
import ca.uhn.fhir.interceptor.api.IInterceptorBroadcaster;
import ca.uhn.fhir.interceptor.api.IInterceptorService;
@@ -9,31 +10,38 @@ import ca.uhn.fhir.jpa.api.config.DaoConfig;
import ca.uhn.fhir.jpa.api.dao.DaoRegistry;
import ca.uhn.fhir.jpa.api.dao.IFhirSystemDao;
import ca.uhn.fhir.jpa.binstore.BinaryStorageInterceptor;
import ca.uhn.fhir.jpa.bulk.provider.BulkDataExportProvider;
import ca.uhn.fhir.jpa.bulk.export.provider.BulkDataExportProvider;
import ca.uhn.fhir.jpa.interceptor.CascadingDeleteInterceptor;
import ca.uhn.fhir.jpa.packages.IPackageInstallerSvc;
import ca.uhn.fhir.jpa.packages.PackageInstallOutcomeJson;
import ca.uhn.fhir.jpa.packages.PackageInstallationSpec;
import ca.uhn.fhir.jpa.partition.PartitionManagementProvider;
import ca.uhn.fhir.jpa.provider.*;
import ca.uhn.fhir.jpa.provider.GraphQLProvider;
import ca.uhn.fhir.jpa.provider.IJpaSystemProvider;
import ca.uhn.fhir.jpa.provider.JpaCapabilityStatementProvider;
import ca.uhn.fhir.jpa.provider.JpaConformanceProviderDstu2;
import ca.uhn.fhir.jpa.provider.SubscriptionTriggeringProvider;
import ca.uhn.fhir.jpa.provider.TerminologyUploaderProvider;
import ca.uhn.fhir.jpa.provider.dstu3.JpaConformanceProviderDstu3;
import ca.uhn.fhir.jpa.provider.r4.JpaConformanceProviderR4;
import ca.uhn.fhir.jpa.provider.r5.JpaConformanceProviderR5;
import ca.uhn.fhir.jpa.search.DatabaseBackedPagingProvider;
import ca.uhn.fhir.jpa.searchparam.registry.ISearchParamRegistry;
import ca.uhn.fhir.jpa.subscription.util.SubscriptionDebugLogInterceptor;
import ca.uhn.fhir.narrative.DefaultThymeleafNarrativeGenerator;
import ca.uhn.fhir.narrative.INarrativeGenerator;
import ca.uhn.fhir.narrative2.NullNarrativeGenerator;
import ca.uhn.fhir.rest.server.ApacheProxyAddressStrategy;
import ca.uhn.fhir.rest.server.ETagSupportEnum;
import ca.uhn.fhir.rest.server.HardcodedServerAddressStrategy;
import ca.uhn.fhir.rest.server.ApacheProxyAddressStrategy;
import ca.uhn.fhir.rest.server.IncomingRequestAddressStrategy;
import ca.uhn.fhir.rest.server.RestfulServer;
import ca.uhn.fhir.rest.server.interceptor.*;
import ca.uhn.fhir.rest.server.interceptor.CorsInterceptor;
import ca.uhn.fhir.rest.server.interceptor.FhirPathFilterInterceptor;
import ca.uhn.fhir.rest.server.interceptor.LoggingInterceptor;
import ca.uhn.fhir.rest.server.interceptor.RequestValidatingInterceptor;
import ca.uhn.fhir.rest.server.interceptor.ResponseHighlighterInterceptor;
import ca.uhn.fhir.rest.server.interceptor.ResponseValidatingInterceptor;
import ca.uhn.fhir.rest.server.interceptor.partition.RequestTenantPartitionInterceptor;
import ca.uhn.fhir.rest.server.provider.ResourceProviderFactory;
import ca.uhn.fhir.rest.server.tenant.UrlBaseTenantIdentificationStrategy;
import ca.uhn.fhir.rest.server.util.ISearchParamRegistry;
import ca.uhn.fhir.validation.IValidatorModule;
import ca.uhn.fhir.validation.ResultSeverityEnum;
import com.google.common.base.Strings;
@@ -44,73 +52,60 @@ import org.springframework.http.HttpHeaders;
import org.springframework.web.cors.CorsConfiguration;
import javax.servlet.ServletException;
import java.util.*;
import java.util.Arrays;
import java.util.Collections;
import java.util.List;
import java.util.Map;
import java.util.Optional;
import java.util.stream.Collectors;
public class BaseJpaRestfulServer extends RestfulServer {
private static final long serialVersionUID = 1L;
@Autowired
DaoRegistry daoRegistry;
@Autowired
DaoConfig daoConfig;
@Autowired
ISearchParamRegistry searchParamRegistry;
@Autowired
IFhirSystemDao fhirSystemDao;
@Autowired
ResourceProviderFactory resourceProviders;
@Autowired
IJpaSystemProvider jpaSystemProvider;
@Autowired
IInterceptorBroadcaster interceptorBroadcaster;
@Autowired
DatabaseBackedPagingProvider databaseBackedPagingProvider;
@Autowired
IInterceptorService interceptorService;
@Autowired
IValidatorModule validatorModule;
@Autowired
Optional<GraphQLProvider> graphQLProvider;
@Autowired
BulkDataExportProvider bulkDataExportProvider;
@Autowired
PartitionManagementProvider partitionManagementProvider;
@Autowired
BinaryStorageInterceptor binaryStorageInterceptor;
@Autowired
IPackageInstallerSvc packageInstallerSvc;
@Autowired
AppProperties appProperties;
@Autowired
ApplicationContext myApplicationContext;
@Autowired(required = false)
IRepositoryValidationInterceptorFactory factory;
// These are set only if the features are enabled
private CqlProviderLoader cqlProviderLoader;
@Autowired
private IValidationSupport myValidationSupport;
public BaseJpaRestfulServer() {
}
private static final long serialVersionUID = 1L;
@SuppressWarnings("unchecked")
@Override
protected void initialize() throws ServletException {
@@ -158,14 +153,14 @@ public class BaseJpaRestfulServer extends RestfulServer {
setServerConformanceProvider(confProvider);
} else if (fhirVersion == FhirVersionEnum.R4) {
JpaConformanceProviderR4 confProvider = new JpaConformanceProviderR4(this, fhirSystemDao,
daoConfig, searchParamRegistry);
JpaCapabilityStatementProvider confProvider = new JpaCapabilityStatementProvider(this, fhirSystemDao,
daoConfig, searchParamRegistry, myValidationSupport);
confProvider.setImplementationDescription("HAPI FHIR R4 Server");
setServerConformanceProvider(confProvider);
} else if (fhirVersion == FhirVersionEnum.R5) {
JpaConformanceProviderR5 confProvider = new JpaConformanceProviderR5(this, fhirSystemDao,
daoConfig, searchParamRegistry);
JpaCapabilityStatementProvider confProvider = new JpaCapabilityStatementProvider(this, fhirSystemDao,
daoConfig, searchParamRegistry, myValidationSupport);
confProvider.setImplementationDescription("HAPI FHIR R5 Server");
setServerConformanceProvider(confProvider);
} else {
@@ -374,7 +369,7 @@ public class BaseJpaRestfulServer extends RestfulServer {
}
}
if(factory != null) {
if (factory != null) {
interceptorService.registerInterceptor(factory.buildUsingStoredStructureDefinitions());
}

8
src/test/java/ca/uhn/fhir/jpa/starter/ExampleServerR5IT.java
View File

@@ -67,16 +67,18 @@ public class ExampleServerR5IT {
public void testWebsocketSubscription() throws Exception {
/*
* Create topic
* Create topic (will be contained in subscription)
*/
SubscriptionTopic topic = new SubscriptionTopic();
topic.getResourceTrigger().getQueryCriteria().setCurrent("Observation?status=final");
topic.setId("#1");
topic.getResourceTriggerFirstRep().getQueryCriteria().setCurrent("Observation?status=final");
/*
* Create subscription
*/
Subscription subscription = new Subscription();
subscription.getTopic().setResource(topic);
subscription.getContained().add(topic);
subscription.setTopic("#1");
subscription.setReason("Monitor new neonatal function (note, age will be determined by the monitor)");
subscription.setStatus(Enumerations.SubscriptionState.REQUESTED);
subscription.getChannelType()