Merge branch 'master' into rel_5_4_0

README.md

@@ -189,6 +189,13 @@ spring:
     password: admin
     driverClassName: com.mysql.jdbc.Driver
 ```
+On some systems, it might be necessary to override hibernate's default naming strategy. The naming strategy must be set using spring.jpa.hibernate.physical_naming_strategy. 
+
+```yaml
+spring:
+  jpa:
+    hibernate.physical_naming_strategy: NAME_OF_PREFERRED_STRATEGY
+```
 
 ### PostgreSQL configuration
 

src/main/java/ca/uhn/fhir/jpa/starter/BaseJpaRestfulServer.java

@@ -106,6 +106,8 @@ public class BaseJpaRestfulServer extends RestfulServer {
   public BaseJpaRestfulServer() {
   }
 
+  private static final long serialVersionUID = 1L;
+
   @SuppressWarnings("unchecked")
   @Override
   protected void initialize() throws ServletException {
@@ -275,7 +277,7 @@ public class BaseJpaRestfulServer extends RestfulServer {
       config.addAllowedHeader("X-Requested-With");
       config.addAllowedHeader("Prefer");
       List<String> allAllowedCORSOrigins = appProperties.getCors().getAllowed_origin();
-			allAllowedCORSOrigins.forEach(config::addAllowedOrigin);
+      allAllowedCORSOrigins.forEach(config::addAllowedOriginPattern);
 
 
       config.addExposedHeader("Location");

src/main/resources/application.yaml

@@ -21,21 +21,20 @@ spring:
 #      hibernate.cache.use_second_level_cache: false
 #      hibernate.cache.use_structured_entries: false
 #      hibernate.cache.use_minimal_puts: false
-
+###    These settings will enable fulltext search with lucene
-       # These settings will enable fulltext search with lucene
 #      hibernate.search.enabled: true
 #      hibernate.search.backend.type: lucene
 #      hibernate.search.backend.analysis.configurer: ca.uhn.fhir.jpa.search.HapiLuceneAnalysisConfigurer
 #      hibernate.search.backend.directory.type: local-filesystem
 #      hibernate.search.backend.directory.root: target/lucenefiles
 #      hibernate.search.backend.lucene_version: lucene_current
-
   batch:
     job:
       enabled: false
-
 hapi:
   fhir:
+    ### This is the FHIR version. Choose between, DSTU2, DSTU3, R4 or R5
+    fhir_version: R4
 ### enable to use the ApacheProxyAddressStrategy which uses X-Forwarded-* headers
 ### to determine the FHIR server address
 #   use_apache_address_strategy: false
@@ -44,11 +43,9 @@ hapi:
 #   use_apache_address_strategy_https: false
 ### enable to set the Server URL
 #    server_address: http://hapi.fhir.org/baseR4
-    ### This is the FHIR version. Choose between, DSTU2, DSTU3, R4 or R5
-    fhir_version: R4
 #    defer_indexing_for_codesystems_of_size: 101
 #    implementationguides:
-      #example from registry (packages.fhir.org)
+###    example from registry (packages.fhir.org)
 #      swiss:
 #        name: swiss.mednet.fhir
 #        version: 0.8.0
@@ -57,7 +54,6 @@ hapi:
 #        url: https://build.fhir.org/ig/HL7/fhir-ips/package.tgz
 #        name: hl7.fhir.uv.ips
 #        version: 1.0.0
-
 #    supported_resource_types:
 #      - Patient
 #      - Observation
@@ -80,6 +76,7 @@ hapi:
 #    etag_support_enabled: true
 #    expunge_enabled: true
 #    daoconfig_client_id_strategy: null
+#    client_id_strategy: ALPHANUMERIC
 #    fhirpath_interceptor_enabled: false
 #    filter_search_enabled: true
 #    graphql_enabled: true
@@ -87,12 +84,11 @@ hapi:
 #    partitioning:
 #      allow_references_across_partitions: false
 #      partitioning_include_in_search_hashes: false
-    #cors:
+     cors:
-    #  allow_Credentials: true
+       allow_Credentials: true
-      # Supports multiple, comma separated allowed origin entries
+       # These are allowed_origin patterns, see: https://docs.spring.io/spring-framework/docs/current/javadoc-api/org/springframework/web/cors/CorsConfiguration.html#setAllowedOriginPatterns-java.util.List-
-      # cors.allowed_origin=http://localhost:8080,https://localhost:8080,https://fhirtest.uhn.ca
+       allowed_origin:
-    #  allowed_origin:
+       - '*'
-    #    - '*'
 
     # Search coordinator thread pool sizes
     search-coord-core-pool-size: 20
@@ -113,13 +109,11 @@ hapi:
 #    retain_cached_searches_mins: 60
 #    reuse_cached_search_results_millis: 60000
     tester:
-
         home:
           name: Local Tester
           server_address: 'http://localhost:8080/fhir'
           refuse_to_fetch_third_party_urls: false
           fhir_version: R4
-
         global:
           name: Global Tester
           server_address: "http://hapi.fhir.org/baseR4"
@@ -149,9 +143,6 @@ hapi:
 ###   1: NORMALIZED_QUANTITY_STORAGE_SUPPORTED
 ###   2: NORMALIZED_QUANTITY_SEARCH_SUPPORTED
 #    normalized_quantity_search_level: 2
-
-
-#
 #elasticsearch:
 #  debug:
 #    pretty_print_json_log: false