Added IG options

pom.xml

@@ -487,6 +487,8 @@
 
         <!-- example of how to start the server using spring boot-->
         <!-- mvn clean package spring-boot:repackage -Pboot && java -jar target/hapi-fhir-jpaserver.war -->
+
+        <!-- Use the boot profile for development and debugging options when using your IDE -->
         <profile>
             <id>boot</id>
             <dependencies>

src/main/java/ca/uhn/fhir/jpa/starter/AppProperties.java

@@ -10,6 +10,7 @@ import java.util.List;
 
 import com.google.common.collect.ImmutableList;
 import org.hl7.fhir.r4.model.Bundle;
+
 import org.springframework.boot.context.properties.ConfigurationProperties;
 import org.springframework.boot.context.properties.EnableConfigurationProperties;
 import org.springframework.context.annotation.Configuration;
@@ -42,6 +43,7 @@ public class AppProperties {
   private Integer default_page_size = 20;
   private Integer max_binary_size = null;
   private Integer max_page_size = Integer.MAX_VALUE;
+  private Integer defer_indexing_for_codesystems_of_size = 100;
   private Long retain_cached_searches_mins = 60L;
   private Long reuse_cached_search_results_millis = 60000L;
   private String server_address = null;
@@ -57,6 +59,23 @@ public class AppProperties {
   private Subscription subscription = new Subscription();
   private Cors cors = null;
   private Partitioning partitioning = null;
+  private List<ImplementationGuide> implementationGuides = null;
+
+  public Integer getDefer_indexing_for_codesystems_of_size() {
+    return defer_indexing_for_codesystems_of_size;
+  }
+
+  public void setDefer_indexing_for_codesystems_of_size(Integer defer_indexing_for_codesystems_of_size) {
+    this.defer_indexing_for_codesystems_of_size = defer_indexing_for_codesystems_of_size;
+  }
+
+  public List<ImplementationGuide> getImplementationGuides() {
+    return implementationGuides;
+  }
+
+  public void setImplementationGuides(List<ImplementationGuide> implementationGuides) {
+    this.implementationGuides = implementationGuides;
+  }
 
   public Partitioning getPartitioning() {
     return partitioning;
@@ -465,6 +484,37 @@ public class AppProperties {
     }
   }
 
+  public static class ImplementationGuide
+  {
+    private String url;
+    private String name;
+    private String version;
+
+    public String getUrl() {
+      return url;
+    }
+
+    public void setUrl(String url) {
+      this.url = url;
+    }
+
+    public String getName() {
+      return name;
+    }
+
+    public void setName(String name) {
+      this.name = name;
+    }
+
+    public String getVersion() {
+      return version;
+    }
+
+    public void setVersion(String version) {
+      this.version = version;
+    }
+  }
+
   public static class Validation {
 
     private Boolean requests_enabled = false;

src/main/java/ca/uhn/fhir/jpa/starter/BaseJpaRestfulServer.java

@@ -10,6 +10,8 @@ import ca.uhn.fhir.jpa.api.dao.IFhirSystemDao;
 import ca.uhn.fhir.jpa.binstore.BinaryStorageInterceptor;
 import ca.uhn.fhir.jpa.bulk.provider.BulkDataExportProvider;
 import ca.uhn.fhir.jpa.interceptor.CascadingDeleteInterceptor;
+import ca.uhn.fhir.jpa.packages.IPackageInstallerSvc;
+import ca.uhn.fhir.jpa.packages.PackageInstallationSpec;
 import ca.uhn.fhir.jpa.partition.PartitionManagementProvider;
 import ca.uhn.fhir.jpa.provider.GraphQLProvider;
 import ca.uhn.fhir.jpa.provider.IJpaSystemProvider;
@@ -87,6 +89,9 @@ public class BaseJpaRestfulServer extends RestfulServer {
   @Autowired
   BinaryStorageInterceptor binaryStorageInterceptor;
 
+  @Autowired
+  IPackageInstallerSvc packageInstallerSvc;
+
   @Autowired
   AppProperties appProperties;
 
@@ -162,7 +167,7 @@ public class BaseJpaRestfulServer extends RestfulServer {
      * ETag Support
      */
 
-    if(appProperties.getEtag_support_enabled() == false)
+    if (appProperties.getEtag_support_enabled() == false)
       setETagSupport(ETagSupportEnum.DISABLED);
 
 
@@ -320,6 +325,8 @@ public class BaseJpaRestfulServer extends RestfulServer {
       daoConfig.setBundleTypesAllowedForStorage(appProperties.getAllowed_bundle_types().stream().map(BundleType::toCode).collect(Collectors.toSet()));
     }
 
+    daoConfig.setDeferIndexingForCodesystemsOfSize(appProperties.getDefer_indexing_for_codesystems_of_size());
+
     // Bulk Export
     if (appProperties.getBulk_export_enabled()) {
       registerProvider(bulkDataExportProvider);
@@ -336,6 +343,17 @@ public class BaseJpaRestfulServer extends RestfulServer {
       daoConfig.setResourceServerIdStrategy(DaoConfig.IdStrategyEnum.UUID);
       daoConfig.setResourceClientIdStrategy(appProperties.getClient_id_strategy());
     }
+
+    if (appProperties.getImplementationGuides() != null) {
+      List<AppProperties.ImplementationGuide> guides = appProperties.getImplementationGuides();
+      for (AppProperties.ImplementationGuide guide : guides) {
+        packageInstallerSvc.install(new PackageInstallationSpec()
+          .setPackageUrl(guide.getUrl())
+          .setName(guide.getName())
+          .setVersion(guide.getVersion())
+          .setInstallMode(PackageInstallationSpec.InstallModeEnum.STORE_AND_INSTALL));
+      }
+    }
   }
 
 

src/main/resources/application.yaml

@@ -7,7 +7,7 @@ spring:
     max-active: 15
   profiles:
     ### This is the FHIR version. Choose between, dstu2, dstu3, r4 or r5
-    active: dstu2
+    active: r4
   jpa:
     properties:
       hibernate.dialect: org.hibernate.dialect.H2Dialect
@@ -26,6 +26,16 @@ spring:
 
 hapi:
   fhir:
+    defer_indexing_for_codesystems_of_size: 101
+    implementationguides:
+      -
+        url: https://build.fhir.org/ig/hl7dk/dk-medcom/branches/corrections/package.tgz
+        name: dk.fhir.ig.medcom-core
+        version: 0.8.0
+      -
+        name: hl7.fhir.uv.ips
+        version: 0.3.0
+
     #supported_resource_types:
     #  - Patient
     #  - Observation