Update Clinical Reasoning plugin (#692)

* Reproducing issues with CR/HAPI cds-hooks processing

* Add new $questionnaire operation

* Update StarterIpsConfig.java

* Update pom.xml

* Fixes for configuration properties

* Update VS Code launch properties

* Fixes for CQL logging

* Update pom.xml

* Remove unused threaded option

* Update to 7.1.7

* Fix some CR defaults

* Update to new snapshot

* Update pom.xml

* Fix test settings

* Do not make prefetch calls if all items are present

* Add alternative application.yaml for CDS settings.

* Add CdsHook tests and documentation

* Comment out custom prefetch until it is more mature

* Removal of DataEndpoint parameter is not longer needed

* Fix debug logging setting being overwritten

* Revert change

* Remove unused class

* Adding Rec10 Test

* Disable test until fixed

* fix tests

---------

Co-authored-by: c-schuler <hoofschu@gmail.com>
Co-authored-by: Jonathan Percival <jonathan.i.percival@gmail.com>

pom.xml

@@ -42,6 +42,15 @@
 
     <dependencyManagement>
        <dependencies>
+
+            <!-- Temporarily override CR depedencies for debugging -->
+<!--            <dependency>-->
+<!--                <groupId>org.opencds.cqf.fhir</groupId>-->
+<!--                <artifactId>cqf-fhir-bom</artifactId>-->
+<!--                <version>3.4.0</version>-->
+<!--                <type>pom</type>-->
+<!--                <scope>import</scope>-->
+<!--            </dependency>-->
            <dependency>
                <groupId>org.glassfish.jaxb</groupId>
                <artifactId>jaxb-runtime</artifactId>