Update Clinical Reasoning plugin (#692)

* Reproducing issues with CR/HAPI cds-hooks processing

* Add new $questionnaire operation

* Update StarterIpsConfig.java

* Update pom.xml

* Fixes for configuration properties

* Update VS Code launch properties

* Fixes for CQL logging

* Update pom.xml

* Remove unused threaded option

* Update to 7.1.7

* Fix some CR defaults

* Update to new snapshot

* Update pom.xml

* Fix test settings

* Do not make prefetch calls if all items are present

* Add alternative application.yaml for CDS settings.

* Add CdsHook tests and documentation

* Comment out custom prefetch until it is more mature

* Removal of DataEndpoint parameter is not longer needed

* Fix debug logging setting being overwritten

* Revert change

* Remove unused class

* Adding Rec10 Test

* Disable test until fixed

* fix tests

---------

Co-authored-by: c-schuler <hoofschu@gmail.com>
Co-authored-by: Jonathan Percival <jonathan.i.percival@gmail.com>

src/test/java/ca/uhn/fhir/jpa/starter/ExampleServerDstu3IT.java

@@ -152,13 +152,6 @@ class ExampleServerDstu3IT implements IServerSupport {
     return count;
   }
 
-  private Bundle loadBundle(String theLocation, FhirContext theCtx, IGenericClient theClient) throws IOException {
-    String json = stringFromResource(theLocation);
-    Bundle bundle = (Bundle) theCtx.newJsonParser().parseResource(json);
-    Bundle result = theClient.transaction().withBundle(bundle).execute();
-    return result;
-  }
-
   @Test
   void testWebsocketSubscription() throws Exception {
     /*