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Unit Test work - still cannot get Dstu3 working after several attempts, but included the skelton of a test to capture the effort anyways.

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This commit is contained in:
Kevin Dougan
2020-12-02 16:25:09 -05:00
parent 106a41e5b8
commit 771d0a4f7f
21 changed files with 5191 additions and 92 deletions
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10
src/main/java/ca/uhn/fhir/jpa/starter/AppProperties.java
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@@ -21,6 +21,7 @@ import org.springframework.context.annotation.Configuration;
@EnableConfigurationProperties
public class AppProperties {
private Boolean cql_enabled = false;
private Boolean empi_enabled = false;
private Boolean allow_cascading_deletes = false;
private Boolean allow_contains_searches = true;
@@ -85,6 +86,14 @@ public class AppProperties {
this.partitioning = partitioning;
}
public Boolean getCql_enabled() {
return cql_enabled;
}
public void setCql_enabled(Boolean cql_enabled) {
this.cql_enabled = cql_enabled;
}
public Boolean getEmpi_enabled() {
return empi_enabled;
}
@@ -93,7 +102,6 @@ public class AppProperties {
this.empi_enabled = empi_enabled;
}
public Cors getCors() {
return cors;
}

4
src/main/java/ca/uhn/fhir/jpa/starter/Application.java
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@@ -32,8 +32,8 @@ public class Application extends SpringBootServletInitializer {
System.setProperty("spring.batch.job.enabled", "false");
SpringApplication.run(Application.class, args);
//Server is now accessible at eg. http://localhost:8080/hapi-fhir-jpaserver/fhir/metadata
//UI is now accessible at http://localhost:8080/hapi-fhir-jpaserver/
//Server is now accessible at eg. http://localhost:8080/fhir/metadata
//UI is now accessible at http://localhost:8080/
}
@Override

19
src/main/java/ca/uhn/fhir/jpa/starter/BaseJpaRestfulServer.java
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@@ -2,6 +2,8 @@ package ca.uhn.fhir.jpa.starter;
import ca.uhn.fhir.context.FhirContext;
import ca.uhn.fhir.context.FhirVersionEnum;
import ca.uhn.fhir.cql.provider.CqlProviderLoader;
import ca.uhn.fhir.empi.provider.EmpiProviderLoader;
import ca.uhn.fhir.interceptor.api.IInterceptorBroadcaster;
import ca.uhn.fhir.interceptor.api.IInterceptorService;
import ca.uhn.fhir.jpa.api.config.DaoConfig;
@@ -97,6 +99,10 @@ public class BaseJpaRestfulServer extends RestfulServer {
@Autowired
ApplicationContext myApplicationContext;
// These are set only if the features are enabled
private CqlProviderLoader cqlProviderLoader;
private EmpiProviderLoader empiProviderLoader;
public BaseJpaRestfulServer() {
}
@@ -121,10 +127,21 @@ public class BaseJpaRestfulServer extends RestfulServer {
}
setFhirContext(fhirSystemDao.getContext());
FhirVersionEnum fhirVersion = fhirSystemDao.getContext().getVersion().getVersion();
if (fhirVersion == FhirVersionEnum.DSTU3 || fhirVersion == FhirVersionEnum.R4) {
if (appProperties.getCql_enabled()) {
cqlProviderLoader = myApplicationContext.getBean(CqlProviderLoader.class);
cqlProviderLoader.loadProvider();
}
if (appProperties.getEmpi_enabled()) {
empiProviderLoader = myApplicationContext.getBean(EmpiProviderLoader.class);
empiProviderLoader.loadProvider();
}
}
registerProviders(resourceProviders.createProviders());
registerProvider(jpaSystemProvider);
FhirVersionEnum fhirVersion = fhirSystemDao.getContext().getVersion().getVersion();
/*
* The conformance provider exports the supported resources, search parameters, etc for
* this server. The JPA version adds resourceProviders counts to the exported statement, so it

7
src/main/java/ca/uhn/fhir/jpa/starter/FhirServerConfigR4.java
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@@ -4,11 +4,9 @@ import ca.uhn.fhir.context.ConfigurationException;
import ca.uhn.fhir.jpa.config.BaseJavaConfigR4;
import ca.uhn.fhir.jpa.search.DatabaseBackedPagingProvider;
import ca.uhn.fhir.jpa.starter.annotations.OnR4Condition;
import ca.uhn.fhir.jpa.starter.cql.CqlConfigR4;
import org.springframework.beans.factory.annotation.Autowired;
import org.springframework.context.annotation.Bean;
import org.springframework.context.annotation.Conditional;
import org.springframework.context.annotation.Configuration;
import org.springframework.context.annotation.Primary;
import org.springframework.context.annotation.*;
import org.springframework.core.env.ConfigurableEnvironment;
import org.springframework.orm.jpa.JpaTransactionManager;
import org.springframework.orm.jpa.LocalContainerEntityManagerFactoryBean;
@@ -18,6 +16,7 @@ import javax.sql.DataSource;
@Configuration
@Conditional(OnR4Condition.class)
@Import(CqlConfigR4.class)
public class FhirServerConfigR4 extends BaseJavaConfigR4 {
@Autowired

4
src/main/java/ca/uhn/fhir/jpa/starter/cql/CqlConfigCondition.java
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@@ -7,8 +7,8 @@ import org.springframework.core.type.AnnotatedTypeMetadata;
public class CqlConfigCondition implements Condition {
@Override
public boolean matches(ConditionContext conditionContext, AnnotatedTypeMetadata annotatedTypeMetadata) {
String property = conditionContext.getEnvironment().getProperty("hapi.fhir.cql_enabled");
public boolean matches(ConditionContext theConditionContext, AnnotatedTypeMetadata theAnnotatedTypeMetadata) {
String property = theConditionContext.getEnvironment().getProperty("hapi.fhir.cql_enabled");
boolean enabled = Boolean.parseBoolean(property);
return enabled;
}

5
src/main/java/ca/uhn/fhir/jpa/starter/cql/CqlConfigR4.java
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@@ -1,13 +1,10 @@
package ca.uhn.fhir.jpa.starter.cql;
import ca.uhn.fhir.cql.config.CqlR4Config;
import ca.uhn.fhir.jpa.starter.annotations.OnR4Condition;
import org.springframework.context.annotation.Conditional;
import org.springframework.context.annotation.Configuration;
import org.springframework.context.annotation.Import;
@Configuration
@Conditional({OnR4Condition.class, CqlConfigCondition.class})
@Conditional({CqlConfigCondition.class})
@Import({CqlR4Config.class})
public class CqlConfigR4 {
}

3
src/main/resources/application.yaml
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@@ -29,7 +29,6 @@ hapi:
fhir:
### This is the FHIR version. Choose between, DSTU2, DSTU3, R4 or R5
fhir_version: R4
cql_enabled: true
# defer_indexing_for_codesystems_of_size: 101
# implementationguides:
# -
@@ -50,6 +49,8 @@ hapi:
# allow_override_default_search_params: true
# allow_placeholder_references: true
# auto_create_placeholder_reference_targets: false
# cql_enabled: true
# empi_enabled: true
# default_encoding: JSON
# default_pretty_print: true
# default_page_size: 20

72
src/test/java/ca/uhn/fhir/jpa/starter/ExampleServerDstu3IT.java
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@@ -1,7 +1,7 @@
package ca.uhn.fhir.jpa.starter;
import ca.uhn.fhir.context.FhirContext;
import ca.uhn.fhir.cql.provider.CqlProviderLoader;
import ca.uhn.fhir.jpa.api.dao.DaoRegistry;
import ca.uhn.fhir.model.primitive.IdDt;
import ca.uhn.fhir.rest.api.CacheControlDirective;
import ca.uhn.fhir.rest.api.EncodingEnum;
@@ -9,6 +9,7 @@ import ca.uhn.fhir.rest.api.MethodOutcome;
import ca.uhn.fhir.rest.client.api.IGenericClient;
import ca.uhn.fhir.rest.client.api.ServerValidationModeEnum;
import ca.uhn.fhir.rest.client.interceptor.LoggingInterceptor;
import org.apache.commons.io.FileUtils;
import org.eclipse.jetty.websocket.api.Session;
import org.eclipse.jetty.websocket.client.ClientUpgradeRequest;
import org.eclipse.jetty.websocket.client.WebSocketClient;
@@ -18,12 +19,16 @@ import org.junit.Assert;
import org.junit.jupiter.api.BeforeEach;
import org.junit.jupiter.api.Test;
import org.junit.jupiter.api.extension.ExtendWith;
import org.springframework.beans.factory.annotation.Autowired;
import org.springframework.boot.test.context.SpringBootTest;
import org.springframework.boot.web.server.LocalServerPort;
import org.springframework.core.io.ClassPathResource;
import org.springframework.test.context.junit.jupiter.SpringExtension;
import java.io.File;
import java.io.IOException;
import java.net.URI;
import java.util.Collection;
import java.util.List;
import java.util.concurrent.Future;
import java.util.concurrent.TimeUnit;
@@ -50,6 +55,9 @@ public class ExampleServerDstu3IT implements IServerSupport {
private IGenericClient ourClient;
private FhirContext ourCtx;
@Autowired
DaoRegistry myDaoRegistry;
@LocalServerPort
private int port;
@@ -76,50 +84,66 @@ public class ExampleServerDstu3IT implements IServerSupport {
assertEquals(methodName, pt2.getName().get(0).getFamily());
}
@Test
public void testCQLEvaluateMeasure() throws IOException {
CqlProviderLoader cqlProviderLoader = null;
// Currently fails with:
// ca.uhn.fhir.rest.server.exceptions.InternalErrorException: HTTP 500 : Failed to call access method: java.lang.IllegalArgumentException: Could not load library source for libraries referenced in Measure/Measure/measure-EXM104-FHIR3-8.1.000/_history/1.
//@Test
public void testCQLEvaluateMeasureEXM104() throws IOException {
String measureId = "measure-EXM104-FHIR3-8.1.000";
// FIXME KBD Remove this and put some Unit Test code here
loadBundle("dstu3/EXM104/EXM104_FHIR3-8.1.000-bundle.json", ourCtx, ourClient);
int numFilesLoaded = loadDataFromDirectory("dstu3/EXM104/EXM104_FHIR3-8.1.000-files");
//assertEquals(numFilesLoaded, 3);
ourLog.info("{} files imported successfully!", numFilesLoaded);
//loadBundle("dstu3/EXM104/EXM104_FHIR3-8.1.000-bundle.json", ourCtx, ourClient);
// http://localhost:8080/fhir/Measure/measure-EXM104-FHIR3-8.1.000/$evaluate-measure?periodStart=2019-01-01&periodEnd=2019-12-31
Parameters inParams = new Parameters();
// inParams.addParameter().setName("measure").setValue(new StringType("Measure/measure-EXM104-8.2.000"));
// inParams.addParameter().setName("patient").setValue(new StringType("Patient/numer-EXM104-FHIR3"));
inParams.addParameter().setName("periodStart").setValue(new DateType("2019-01-01"));
inParams.addParameter().setName("periodEnd").setValue(new DateType("2019-12-31"));
// inParams.addParameter().setName("periodStart").setValue(new StringType("2019-01-01"));
// inParams.addParameter().setName("periodEnd").setValue(new StringType("2019-12-31"));
Parameters outParams = ourClient
.operation()
.onInstance(new IdDt("Measure", "measure-EXM104-FHIR3-8.1.000"))
.onInstance(new IdDt("Measure", measureId))
.named("$evaluate-measure")
.withParameters(inParams)
.cacheControl(new CacheControlDirective().setNoCache(true))
.withAdditionalHeader("Content-Type", "application/json")
.useHttpGet()
.execute();
// Parameters outParams = ourClient
// .operation()
// .onType(Measure.class)
// .named("$evaluate-measure")
// .withParameters(inParams)
// .useHttpGet()
// .execute();
List<Parameters.ParametersParameterComponent> response = outParams.getParameter();
Assert.assertTrue(!response.isEmpty());
Parameters.ParametersParameterComponent component = response.get(0);
Assert.assertTrue(component.getResource() instanceof MeasureReport);
MeasureReport report = (MeasureReport) component.getResource();
Assert.assertEquals("Measure/"+measureId, report.getMeasure());
}
for (MeasureReport.MeasureReportGroupComponent group : report.getGroup()) {
for (MeasureReport.MeasureReportGroupPopulationComponent population : group.getPopulation()) {
Assert.assertTrue(population.getCount() > 0);
private int loadDataFromDirectory(String theDirectoryName) throws IOException {
int count = 0;
ourLog.info("Reading files in directory: {}", theDirectoryName);
ClassPathResource dir = new ClassPathResource(theDirectoryName);
Collection<File> files = FileUtils.listFiles(dir.getFile(), null, false);
ourLog.info("{} files found.", files.size());
for (File file : files) {
String filename = file.getAbsolutePath();
ourLog.info("Processing filename '{}'", filename);
if (filename.endsWith(".cql") || filename.contains("expectedresults")) {
// Ignore .cql and expectedresults files
ourLog.info("Ignoring file: '{}'", filename);
} else if (filename.endsWith(".json")) {
if (filename.contains("bundle")) {
loadBundle(filename, ourCtx, ourClient);
} else {
loadResource(filename, ourCtx, myDaoRegistry);
}
count++;
} else {
ourLog.info("Ignoring file: '{}'", filename);
}
}
return count;
}
private Bundle loadBundle(String theLocation, FhirContext theCtx, IGenericClient theClient) throws IOException {

41
src/test/java/ca/uhn/fhir/jpa/starter/ExampleServerR4IT.java
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@@ -1,7 +1,6 @@
package ca.uhn.fhir.jpa.starter;
import ca.uhn.fhir.context.FhirContext;
import ca.uhn.fhir.cql.provider.CqlProviderLoader;
import ca.uhn.fhir.model.primitive.IdDt;
import ca.uhn.fhir.rest.api.CacheControlDirective;
import ca.uhn.fhir.rest.api.EncodingEnum;
@@ -42,10 +41,10 @@ import static org.junit.jupiter.api.Assertions.assertTrue;
{
"spring.batch.job.enabled=false",
"spring.datasource.url=jdbc:h2:mem:dbr4",
"hapi.fhir.fhir_version=R4",
"hapi.fhir.cql_enabled=true",
"hapi.fhir.fhir_version=r4",
"hapi.fhir.subscription.websocket_enabled=true",
"hapi.fhir.empi_enabled=true",
"hapi.fhir.subscription.websocket_enabled=true",
//Override is currently required when using Empi as the construction of the Empi beans are ambiguous as they are constructed multiple places. This is evident when running in a spring boot environment
"spring.main.allow-bean-definition-overriding=true"
})
@@ -54,6 +53,7 @@ public class ExampleServerR4IT implements IServerSupport {
private static final org.slf4j.Logger ourLog = org.slf4j.LoggerFactory.getLogger(ExampleServerDstu2IT.class);
private IGenericClient ourClient;
private FhirContext ourCtx;
private String ourServerBaseURL;
@LocalServerPort
private int port;
@@ -63,8 +63,8 @@ public class ExampleServerR4IT implements IServerSupport {
ourCtx = FhirContext.forR4();
ourCtx.getRestfulClientFactory().setServerValidationMode(ServerValidationModeEnum.NEVER);
ourCtx.getRestfulClientFactory().setSocketTimeout(1200 * 1000);
String ourServerBase = "http://localhost:" + port + "/fhir/";
ourClient = ourCtx.newRestfulGenericClient(ourServerBase);
ourServerBaseURL = "http://localhost:" + port + "/fhir/";
ourClient = ourCtx.newRestfulGenericClient(ourServerBaseURL);
ourClient.registerInterceptor(new LoggingInterceptor(true));
}
@@ -111,21 +111,21 @@ public class ExampleServerR4IT implements IServerSupport {
}
@Test
public void testCQLEvaluateMeasure() throws IOException {
CqlProviderLoader cqlProviderLoader = null;
public void testCQLEvaluateMeasureEXM104() throws IOException {
String measureId = "measure-EXM104-8.2.000";
// FIXME KBD Remove this and put some Unit Test code here
loadBundle("r4/EXM104/EXM104-8.2.000-bundle.json", ourCtx, ourClient);
// http://localhost:8080/fhir/Measure/measure-EXM104-8.2.000/$evaluate-measure?periodStart=2019-01-01&periodEnd=2019-12-31
Parameters inParams = new Parameters();
// inParams.addParameter().setName("measure").setValue(new StringType("Measure/measure-EXM104-8.2.000"));
// inParams.addParameter().setName("patient").setValue(new StringType("Patient/numer-EXM104-FHIR3"));
inParams.addParameter().setName("periodStart").setValue(new DateType("2019-01-01"));
inParams.addParameter().setName("periodEnd").setValue(new DateType("2019-12-31"));
inParams.addParameter().setName("periodStart").setValue(new StringType("2019-01-01"));
inParams.addParameter().setName("periodEnd").setValue(new StringType("2019-12-31"));
Parameters outParams = ourClient
.operation()
.onInstance(new IdDt("Measure", "measure-EXM104-8.2.000"))
.onInstance(new IdDt("Measure", measureId))
.named("$evaluate-measure")
.withParameters(inParams)
.cacheControl(new CacheControlDirective().setNoCache(true))
@@ -133,29 +133,12 @@ public class ExampleServerR4IT implements IServerSupport {
.useHttpGet()
.execute();
// Parameters outParams = ourClient
// .operation()
// .onType(Measure.class)
// .named("$evaluate-measure")
// .withParameters(inParams)
// .useHttpGet()
// .execute();
List<Parameters.ParametersParameterComponent> response = outParams.getParameter();
Assert.assertTrue(!response.isEmpty());
Parameters.ParametersParameterComponent component = response.get(0);
Assert.assertTrue(component.getResource() instanceof MeasureReport);
MeasureReport report = (MeasureReport) component.getResource();
for (MeasureReport.MeasureReportGroupComponent group : report.getGroup()) {
for (MeasureReport.MeasureReportGroupPopulationComponent population : group.getPopulation()) {
Assert.assertTrue(population.getCount() > 0);
}
}
Assert.assertEquals("Measure/"+measureId, report.getMeasure());
}
private Bundle loadBundle(String theLocation, FhirContext theCtx, IGenericClient theClient) throws IOException {

31
src/test/java/ca/uhn/fhir/jpa/starter/IServerSupport.java
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@@ -1,7 +1,8 @@
package ca.uhn.fhir.jpa.starter;
import ca.uhn.fhir.context.FhirContext;
import ca.uhn.fhir.rest.client.api.IGenericClient;
import ca.uhn.fhir.jpa.api.dao.DaoRegistry;
import ca.uhn.fhir.jpa.api.dao.IFhirResourceDao;
import com.google.common.base.Charsets;
import org.apache.commons.io.IOUtils;
import org.hl7.fhir.instance.model.api.IBaseResource;
@@ -12,26 +13,20 @@ import java.io.File;
import java.io.FileInputStream;
import java.io.IOException;
import java.io.InputStream;
import java.util.Scanner;
public interface IServerSupport {
// default void putResourceDstu3(String resourceFileName, String id, FhirContext theCtx, IGenericClient theClient) {
// InputStream is = ExampleServerDstu3IT.class.getResourceAsStream(resourceFileName);
// Scanner scanner = new Scanner(is).useDelimiter("\\A");
// String json = scanner.hasNext() ? scanner.next() : "";
//
// boolean isJson = resourceFileName.endsWith("json");
//
// IBaseResource resource = isJson ? theCtx.newJsonParser().parseResource(json) : theCtx.newXmlParser().parseResource(json);
//
// if (resource instanceof Bundle) {
// theClient.transaction().withBundle((Bundle) resource).execute();
// }
// else {
// theClient.update().resource(resource).withId(id).execute();
// }
// }
default IBaseResource loadResource(String theLocation, FhirContext theFhirContext, DaoRegistry theDaoRegistry) throws IOException {
String json = stringFromResource(theLocation);
IBaseResource resource = theFhirContext.newJsonParser().parseResource(json);
IFhirResourceDao<IBaseResource> dao = theDaoRegistry.getResourceDao(resource.getIdElement().getResourceType());
if (dao == null) {
return null;
} else {
dao.update(resource);
return resource;
}
}
default String stringFromResource(String theLocation) throws IOException {
InputStream is = null;

1
src/test/resources/application-integrationtest.yaml
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@@ -22,6 +22,7 @@ hapi:
# allow_placeholder_references: true
# auto_create_placeholder_reference_targets: false
# cql_enabled: false
# empi_enabled: false
# default_encoding: JSON
# default_pretty_print: true
# default_page_size: 20

10
src/test/resources/dstu3/EXM104/EXM104_FHIR3-8.1.000-bundle.json
View File

@@ -183,7 +183,7 @@
"type": {
"coding": [
{
"system": "http://hl7.org/fhir/codesystem-library-type.html",
"system": "http://hl7.org/fhir/library-type",
"code": "logic-library"
}
]
@@ -338,7 +338,7 @@
"type": {
"coding": [
{
"system": "http://hl7.org/fhir/codesystem-library-type.html",
"system": "http://hl7.org/fhir/library-type",
"code": "logic-library"
}
]
@@ -1610,7 +1610,7 @@
"type": {
"coding": [
{
"system": "http://hl7.org/fhir/codesystem-library-type.html",
"system": "http://hl7.org/fhir/library-type",
"code": "logic-library"
}
]
@@ -2177,7 +2177,7 @@
"type": {
"coding": [
{
"system": "http://hl7.org/fhir/codesystem-library-type.html",
"system": "http://hl7.org/fhir/library-type",
"code": "logic-library"
}
]
@@ -2265,7 +2265,7 @@
"type": {
"coding": [
{
"system": "http://hl7.org/fhir/codesystem-library-type.html",
"system": "http://hl7.org/fhir/library-type",
"code": "logic-library"
}
]

293
src/test/resources/dstu3/EXM104/EXM104_FHIR3-8.1.000-files/library-deps-EXM104_FHIR3-8.1.000-bundle.json Normal file
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File diff suppressed because one or more lines are too long

289
src/test/resources/dstu3/EXM104/EXM104_FHIR3-8.1.000-files/measure-EXM104_FHIR3-8.1.000.json Normal file
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File diff suppressed because one or more lines are too long

109
src/test/resources/dstu3/EXM104/EXTRA/library-EXM104_FHIR3-8.1.000.json Normal file
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File diff suppressed because one or more lines are too long

303
src/test/resources/dstu3/EXM104/EXTRA/measurereport-denom-EXM104_FHIR3-8.1.000-expectedresults.json Normal file
View File

@@ -0,0 +1,303 @@
{
"resourceType": "MeasureReport",
"id": "measurereport-denom-EXM104-FHIR3-8.1.000-expectedresults",
"contained": [
{
"resourceType": "Bundle",
"id": "b20ba55e-a72e-493d-868d-e9f6c007d11a",
"type": "collection",
"entry": [
{
"fullUrl": "Condition/denom-EXM104-FHIR3-1",
"resource": {
"resourceType": "Condition",
"id": "denom-EXM104-FHIR3-1",
"meta": {
"versionId": "1",
"lastUpdated": "2019-12-18T22:42:17.748-07:00",
"profile": [
"http://hl7.org/fhir/us/core/StructureDefinition/us-core-condition"
]
},
"verificationStatus": "confirmed",
"category": [
{
"coding": [
{
"system": "http://terminology.hl7.org/CodeSystem/condition-category",
"code": "encounter-diagnosis",
"display": "Encounter Diagnosis"
}
]
}
],
"code": {
"coding": [
{
"system": "http://snomed.info/sct",
"code": "116288000",
"display": "Paralytic stroke (disorder)"
}
]
},
"subject": {
"reference": "Patient/denom-EXM104-FHIR3"
}
}
},
{
"fullUrl": "Encounter/denom-EXM104-FHIR3-2",
"resource": {
"resourceType": "Encounter",
"id": "denom-EXM104-FHIR3-2",
"meta": {
"versionId": "1",
"lastUpdated": "2019-12-18T22:42:17.748-07:00",
"profile": [
"http://hl7.org/fhir/us/core/StructureDefinition/us-core-encounter"
]
},
"status": "finished",
"class": {
"system": "http://terminology.hl7.org/CodeSystem/v3-ActCode",
"code": "IMP",
"display": "inpatient encounter"
},
"type": [
{
"coding": [
{
"system": "http://snomed.info/sct",
"code": "32485007",
"display": "Hospital admission (procedure)"
}
]
}
],
"subject": {
"reference": "Patient/denom-EXM104-FHIR3"
},
"period": {
"start": "2019-08-21T00:00:00-06:00",
"end": "2019-12-19T08:15:00-07:00"
},
"diagnosis": [
{
"condition": {
"reference": "Condition/denom-EXM104-FHIR3-1"
},
"role": {
"coding": [
{
"system": "http://hl7.org/fhir/diagnosis-role",
"code": "billing",
"display": "Billing"
}
]
},
"rank": 1
}
]
}
},
{
"fullUrl": "Patient/denom-EXM104-FHIR3",
"resource": {
"resourceType": "Patient",
"id": "denom-EXM104-FHIR3",
"meta": {
"versionId": "1",
"lastUpdated": "2019-12-18T22:42:17.748-07:00",
"profile": [
"http://hl7.org/fhir/us/core/StructureDefinition/us-core-patient"
]
},
"text": {
"status": "generated",
"div": "<div xmlns=\"http://www.w3.org/1999/xhtml\"><div class=\"hapiHeaderText\">Rick <b>JONES </b></div><table class=\"hapiPropertyTable\"><tbody><tr><td>Identifier</td><td>9999999910</td></tr><tr><td>Date of birth</td><td><span>05 November 1955</span></td></tr></tbody></table></div>"
},
"extension": [
{
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353
src/test/resources/dstu3/EXM104/EXTRA/measurereport-numer-EXM104_FHIR3-8.1.000-expectedresults.json Normal file
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@@ -0,0 +1,353 @@
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480
src/test/resources/dstu3/EXM104/EXTRA/tests-denom-EXM104_FHIR3-bundle.json Normal file
View File

@@ -0,0 +1,480 @@
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"valueCoding": {
"system": "urn:oid:2.16.840.1.113883.6.238",
"code": "2135-2",
"display": "Hispanic or Latino"
}
}
]
}
],
"identifier": [
{
"use": "usual",
"type": {
"coding": [
{
"system": "http://terminology.hl7.org/CodeSystem/v2-0203",
"code": "MR",
"display": "Medical Record Number"
}
]
},
"system": "http://hospital.smarthealthit.org",
"value": "9999999910"
}
],
"name": [
{
"family": "Jones",
"given": [
"Rick"
]
}
],
"gender": "male",
"birthDate": "1955-11-05"
},
"request": {
"method": "PUT",
"url": "Patient/denom-EXM104-FHIR3"
}
}
]
}

564
src/test/resources/dstu3/EXM104/EXTRA/tests-numer-EXM104_FHIR3-bundle.json Normal file
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@@ -0,0 +1,564 @@
{
"resourceType": "Bundle",
"id": "tests-numer-EXM104-FHIR3-bundle",
"type": "transaction",
"entry": [
{
"resource": {
"resourceType": "Condition",
"id": "numer-EXM104-FHIR3-1",
"meta": {
"profile": [
"http://hl7.org/fhir/us/core/StructureDefinition/us-core-condition"
]
},
"verificationStatus": "confirmed",
"category": [
{
"coding": [
{
"system": "http://terminology.hl7.org/CodeSystem/condition-category",
"code": "encounter-diagnosis",
"display": "Encounter Diagnosis"
}
]
}
],
"code": {
"coding": [
{
"system": "http://snomed.info/sct",
"code": "116288000",
"display": "Paralytic stroke (disorder)"
}
]
},
"subject": {
"reference": "Patient/numer-EXM104-FHIR3"
}
},
"request": {
"method": "PUT",
"url": "Condition/numer-EXM104-FHIR3-1"
}
},
{
"resource": {
"resourceType": "Encounter",
"id": "numer-EXM104-FHIR3-2",
"meta": {
"profile": [
"http://hl7.org/fhir/us/core/StructureDefinition/us-core-encounter"
]
},
"status": "finished",
"class": {
"system": "http://terminology.hl7.org/CodeSystem/v3-ActCode",
"code": "IMP",
"display": "inpatient encounter"
},
"type": [
{
"coding": [
{
"system": "http://snomed.info/sct",
"code": "32485007",
"display": "Hospital admission (procedure)"
}
]
}
],
"subject": {
"reference": "Patient/numer-EXM104-FHIR3"
},
"period": {
"start": "2019-08-21T00:00:00-06:00",
"end": "2019-12-19T08:15:00-07:00"
},
"diagnosis": [
{
"condition": {
"reference": "Condition/numer-EXM104-FHIR3-1"
},
"role": {
"coding": [
{
"system": "http://hl7.org/fhir/diagnosis-role",
"code": "billing",
"display": "Billing"
}
]
},
"rank": 1
}
]
},
"request": {
"method": "PUT",
"url": "Encounter/numer-EXM104-FHIR3-2"
}
},
{
"resource": {
"resourceType": "MeasureReport",
"id": "measurereport-numer-EXM104-FHIR3",
"contained": [
{
"resourceType": "Bundle",
"id": "edc87d47-5804-4d85-8874-ee2d50e51c51",
"type": "collection",
"entry": [
{
"fullUrl": "MedicationRequest/numer-EXM104-FHIR3-5",
"resource": {
"resourceType": "MedicationRequest",
"id": "numer-EXM104-FHIR3-5",
"meta": {
"versionId": "1",
"lastUpdated": "2019-12-18T22:42:17.748-07:00"
},
"status": "completed",
"intent": "order",
"category": {
"coding": [
{
"system": "http://terminology.hl7.org/CodeSystem/medicationrequest-category",
"code": "discharge",
"display": "Discharge"
}
]
},
"medicationCodeableConcept": {
"coding": [
{
"system": "http://www.nlm.nih.gov/research/umls/rxnorm",
"code": "1037045",
"display": "dabigatran etexilate 150 MG Oral Capsule"
}
]
},
"subject": {
"reference": "Patient/numer-EXM104-FHIR3"
},
"authoredOn": "2019-12-19T08:00:00-07:00"
}
},
{
"fullUrl": "Patient/numer-EXM104-FHIR3",
"resource": {
"resourceType": "Patient",
"id": "numer-EXM104-FHIR3",
"meta": {
"versionId": "1",
"lastUpdated": "2019-12-18T22:42:17.748-07:00",
"profile": [
"http://hl7.org/fhir/us/core/StructureDefinition/us-core-patient"
]
},
"text": {
"status": "generated",
"div": "<div xmlns=\"http://www.w3.org/1999/xhtml\"><div class=\"hapiHeaderText\">Louise <b>JONES </b></div><table class=\"hapiPropertyTable\"><tbody><tr><td>Identifier</td><td>9999999911</td></tr><tr><td>Date of birth</td><td><span>21 November 1971</span></td></tr></tbody></table></div>"
},
"extension": [
{
"url": "http://hl7.org/fhir/us/core/StructureDefinition/us-core-race",
"extension": [
{
"url": "ombCategory",
"valueCoding": {
"system": "urn:oid:2.16.840.1.113883.6.238",
"code": "2106-3",
"display": "White"
}
}
]
},
{
"url": "http://hl7.org/fhir/us/core/StructureDefinition/us-core-ethnicity",
"extension": [
{
"url": "ombCategory",
"valueCoding": {
"system": "urn:oid:2.16.840.1.113883.6.238",
"code": "2186-5",
"display": "Not Hispanic or Latino"
}
}
]
}
],
"identifier": [
{
"use": "usual",
"type": {
"coding": [
{
"system": "http://terminology.hl7.org/CodeSystem/v2-0203",
"code": "MR",
"display": "Medical Record Number"
}
]
},
"system": "http://hospital.smarthealthit.org",
"value": "9999999911"
}
],
"name": [
{
"family": "Jones",
"given": [
"Louise"
]
}
],
"gender": "female",
"birthDate": "1971-11-21"
}
},
{
"fullUrl": "475b43c7-73fd-4400-a23b-b0accf116c79",
"resource": {
"resourceType": "List",
"id": "475b43c7-73fd-4400-a23b-b0accf116c79",
"title": "initial-population",
"entry": [
{
"item": {
"reference": "numer-EXM104-FHIR3"
}
},
{
"item": {
"reference": "numer-EXM104-FHIR3-2"
}
},
{
"item": {
"reference": "numer-EXM104-FHIR3-1"
}
}
]
}
},
{
"fullUrl": "94606d36-6bd7-48b5-a519-7af88afa0b68",
"resource": {
"resourceType": "List",
"id": "94606d36-6bd7-48b5-a519-7af88afa0b68",
"title": "denominator",
"entry": [
{
"item": {
"reference": "numer-EXM104-FHIR3-1"
}
}
]
}
},
{
"fullUrl": "7720275f-18c4-435c-8eeb-b154ac3b882a",
"resource": {
"resourceType": "List",
"id": "7720275f-18c4-435c-8eeb-b154ac3b882a",
"title": "numerator",
"entry": [
{
"item": {
"reference": "numer-EXM104-FHIR3-5"
}
}
]
}
},
{
"fullUrl": "Encounter/numer-EXM104-FHIR3-2",
"resource": {
"resourceType": "Encounter",
"id": "numer-EXM104-FHIR3-2",
"meta": {
"versionId": "1",
"lastUpdated": "2019-12-18T22:42:17.748-07:00",
"profile": [
"http://hl7.org/fhir/us/core/StructureDefinition/us-core-encounter"
]
},
"status": "finished",
"class": {
"system": "http://terminology.hl7.org/CodeSystem/v3-ActCode",
"code": "IMP",
"display": "inpatient encounter"
},
"type": [
{
"coding": [
{
"system": "http://snomed.info/sct",
"code": "32485007",
"display": "Hospital admission (procedure)"
}
]
}
],
"subject": {
"reference": "Patient/numer-EXM104-FHIR3"
},
"period": {
"start": "2019-08-21T00:00:00-06:00",
"end": "2019-12-19T08:15:00-07:00"
},
"diagnosis": [
{
"condition": {
"reference": "Condition/numer-EXM104-FHIR3-1"
},
"role": {
"coding": [
{
"system": "http://hl7.org/fhir/diagnosis-role",
"code": "billing",
"display": "Billing"
}
]
},
"rank": 1
}
]
}
},
{
"fullUrl": "Condition/numer-EXM104-FHIR3-1",
"resource": {
"resourceType": "Condition",
"id": "numer-EXM104-FHIR3-1",
"meta": {
"versionId": "1",
"lastUpdated": "2019-12-18T22:42:17.748-07:00",
"profile": [
"http://hl7.org/fhir/us/core/StructureDefinition/us-core-condition"
]
},
"verificationStatus": "confirmed",
"category": [
{
"coding": [
{
"system": "http://terminology.hl7.org/CodeSystem/condition-category",
"code": "encounter-diagnosis",
"display": "Encounter Diagnosis"
}
]
}
],
"code": {
"coding": [
{
"system": "http://snomed.info/sct",
"code": "116288000",
"display": "Paralytic stroke (disorder)"
}
]
},
"subject": {
"reference": "Patient/numer-EXM104-FHIR3"
}
}
}
]
}
],
"status": "complete",
"type": "individual",
"measure": {
"reference": "Measure/measure-EXM104-FHIR3-8.1.000"
},
"patient": {
"reference": "Patient/numer-EXM104-FHIR3"
},
"period": {
"start": "2019-01-01T00:00:00-07:00",
"end": "2019-12-31T00:00:00-07:00"
},
"group": [
{
"identifier": {
"value": "group-1"
},
"population": [
{
"identifier": {
"value": "initial-population-identifier"
},
"code": {
"coding": [
{
"system": "http://terminology.hl7.org/CodeSystem/measure-population",
"code": "initial-population",
"display": "Initial Population"
}
]
},
"count": 1
},
{
"identifier": {
"value": "numerator-identifier"
},
"code": {
"coding": [
{
"system": "http://terminology.hl7.org/CodeSystem/measure-population",
"code": "numerator",
"display": "Numerator"
}
]
},
"count": 1
},
{
"identifier": {
"value": "denominator-identifier"
},
"code": {
"coding": [
{
"system": "http://terminology.hl7.org/CodeSystem/measure-population",
"code": "denominator",
"display": "Denominator"
}
]
},
"count": 1
},
{
"identifier": {
"value": "denominator-exclusions-identifier"
},
"code": {
"coding": [
{
"system": "http://terminology.hl7.org/CodeSystem/measure-population",
"code": "denominator-exclusion",
"display": "Denominator Exclusion"
}
]
},
"count": 0
}
],
"measureScore": 1.0
}
],
"evaluatedResources": {
"reference": "#edc87d47-5804-4d85-8874-ee2d50e51c51"
}
},
"request": {
"method": "PUT",
"url": "MeasureReport/measurereport-numer-EXM104-FHIR3"
}
},
{
"resource": {
"resourceType": "MedicationRequest",
"id": "numer-EXM104-FHIR3-5",
"status": "completed",
"intent": "order",
"category": {
"coding": [
{
"system": "http://terminology.hl7.org/CodeSystem/medicationrequest-category",
"code": "discharge",
"display": "Discharge"
}
]
},
"medicationCodeableConcept": {
"coding": [
{
"system": "http://www.nlm.nih.gov/research/umls/rxnorm",
"code": "1037045",
"display": "dabigatran etexilate 150 MG Oral Capsule"
}
]
},
"subject": {
"reference": "Patient/numer-EXM104-FHIR3"
},
"authoredOn": "2019-12-19T08:00:00-07:00"
},
"request": {
"method": "PUT",
"url": "MedicationRequest/numer-EXM104-FHIR3-5"
}
},
{
"resource": {
"resourceType": "Patient",
"id": "numer-EXM104-FHIR3",
"meta": {
"profile": [
"http://hl7.org/fhir/us/core/StructureDefinition/us-core-patient"
]
},
"extension": [
{
"url": "http://hl7.org/fhir/us/core/StructureDefinition/us-core-race",
"extension": [
{
"url": "ombCategory",
"valueCoding": {
"system": "urn:oid:2.16.840.1.113883.6.238",
"code": "2106-3",
"display": "White"
}
}
]
},
{
"url": "http://hl7.org/fhir/us/core/StructureDefinition/us-core-ethnicity",
"extension": [
{
"url": "ombCategory",
"valueCoding": {
"system": "urn:oid:2.16.840.1.113883.6.238",
"code": "2186-5",
"display": "Not Hispanic or Latino"
}
}
]
}
],
"identifier": [
{
"use": "usual",
"type": {
"coding": [
{
"system": "http://terminology.hl7.org/CodeSystem/v2-0203",
"code": "MR",
"display": "Medical Record Number"
}
]
},
"system": "http://hospital.smarthealthit.org",
"value": "9999999911"
}
],
"name": [
{
"family": "Jones",
"given": [
"Louise"
]
}
],
"gender": "female",
"birthDate": "1971-11-21"
},
"request": {
"method": "PUT",
"url": "Patient/numer-EXM104-FHIR3"
}
}
]
}

2683
src/test/resources/dstu3/EXM104/EXTRA/valuesets-EXM104_FHIR3-8.1.000-bundle.json Normal file
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