Personal-Twin/hapi-fhir-jpaserver-starter
1
0
Fork 0
Code Issues Pull Requests Packages Projects Releases Wiki Activity

Get R5 support working

Browse Source
This commit is contained in:
jamesagnew
2019-08-11 18:35:43 -04:00
parent ef49c11e8e
commit 7831250d92
10 changed files with 332 additions and 53 deletions
Download Patch File Download Diff File Expand all files Collapse all files

2
src/main/java/ca/uhn/fhir/jpa/starter/ApplicationContext.java
View File

@@ -13,6 +13,8 @@ public class ApplicationContext extends AnnotationConfigWebApplicationContext {
register(FhirServerConfigDstu3.class, FhirServerConfigCommon.class);
} else if (fhirVersion == FhirVersionEnum.R4) {
register(FhirServerConfigR4.class, FhirServerConfigCommon.class);
} else if (fhirVersion == FhirVersionEnum.R5) {
register(FhirServerConfigR5.class, FhirServerConfigCommon.class);
} else {
throw new IllegalStateException();
}

58
src/main/java/ca/uhn/fhir/jpa/starter/FhirServerConfigR5.java Normal file
View File

@@ -0,0 +1,58 @@
package ca.uhn.fhir.jpa.starter;
import ca.uhn.fhir.context.ConfigurationException;
import ca.uhn.fhir.jpa.config.BaseJavaConfigR4;
import ca.uhn.fhir.jpa.config.BaseJavaConfigR5;
import ca.uhn.fhir.jpa.search.DatabaseBackedPagingProvider;
import org.springframework.beans.factory.annotation.Autowired;
import org.springframework.context.annotation.Bean;
import org.springframework.context.annotation.Configuration;
import org.springframework.orm.jpa.JpaTransactionManager;
import org.springframework.orm.jpa.LocalContainerEntityManagerFactoryBean;
import javax.persistence.EntityManagerFactory;
import javax.sql.DataSource;
@Configuration
public class FhirServerConfigR5 extends BaseJavaConfigR5 {
@Autowired
private DataSource myDataSource;
/**
* We override the paging provider definition so that we can customize
* the default/max page sizes for search results. You can set these however
* you want, although very large page sizes will require a lot of RAM.
*/
@Override
public DatabaseBackedPagingProvider databaseBackedPagingProvider() {
DatabaseBackedPagingProvider pagingProvider = super.databaseBackedPagingProvider();
pagingProvider.setDefaultPageSize(HapiProperties.getDefaultPageSize());
pagingProvider.setMaximumPageSize(HapiProperties.getMaximumPageSize());
return pagingProvider;
}
@Override
@Bean()
public LocalContainerEntityManagerFactoryBean entityManagerFactory() {
LocalContainerEntityManagerFactoryBean retVal = super.entityManagerFactory();
retVal.setPersistenceUnitName("HAPI_PU");
try {
retVal.setDataSource(myDataSource);
} catch (Exception e) {
throw new ConfigurationException("Could not set the data source due to a configuration issue", e);
}
retVal.setJpaProperties(HapiProperties.getProperties());
return retVal;
}
@Bean()
public JpaTransactionManager transactionManager(EntityManagerFactory entityManagerFactory) {
JpaTransactionManager retVal = new JpaTransactionManager();
retVal.setEntityManagerFactory(entityManagerFactory);
return retVal;
}
}

15
src/main/java/ca/uhn/fhir/jpa/starter/HapiProperties.java
View File

@@ -52,6 +52,8 @@ public class HapiProperties {
static final String ALLOW_OVERRIDE_DEFAULT_SEARCH_PARAMS = "allow_override_default_search_params";
static final String EMAIL_FROM = "email.from";
public static final String BINARY_STORAGE_ENABLED = "binary_storage.enabled";
private static final String VALIDATE_REQUESTS_ENABLED = "validation.requests.enabled";
private static final String VALIDATE_RESPONSES_ENABLED = "validation.responses.enabled";
private static Properties properties;
@@ -146,6 +148,10 @@ public class HapiProperties {
return Boolean.parseBoolean(value);
}
private static boolean getBooleanProperty(String propertyName, boolean defaultValue) {
return getBooleanProperty(propertyName, Boolean.valueOf(defaultValue));
}
private static Integer getIntegerProperty(String propertyName, Integer defaultValue) {
String value = HapiProperties.getProperty(propertyName);
@@ -346,4 +352,13 @@ public class HapiProperties {
String value = HapiProperties.getProperty(REUSE_CACHED_SEARCH_RESULTS_MILLIS, "-1");
return Long.valueOf(value);
}
public static boolean getValidateRequestsEnabled() {
return HapiProperties.getBooleanProperty(VALIDATE_REQUESTS_ENABLED, false);
}
public static boolean getValidateResponsesEnabled() {
return HapiProperties.getBooleanProperty(VALIDATE_REQUESTS_ENABLED, false);
}
}

59
src/main/java/ca/uhn/fhir/jpa/starter/JpaRestfulServer.java
View File

@@ -5,7 +5,6 @@ import ca.uhn.fhir.context.FhirVersionEnum;
import ca.uhn.fhir.interceptor.api.IInterceptorBroadcaster;
import ca.uhn.fhir.interceptor.api.IInterceptorService;
import ca.uhn.fhir.jpa.binstore.BinaryStorageInterceptor;
import ca.uhn.fhir.jpa.binstore.IBinaryStorageSvc;
import ca.uhn.fhir.jpa.dao.DaoConfig;
import ca.uhn.fhir.jpa.dao.DaoRegistry;
import ca.uhn.fhir.jpa.dao.IFhirSystemDao;
@@ -13,12 +12,13 @@ import ca.uhn.fhir.jpa.interceptor.CascadingDeleteInterceptor;
import ca.uhn.fhir.jpa.provider.JpaConformanceProviderDstu2;
import ca.uhn.fhir.jpa.provider.JpaSystemProviderDstu2;
import ca.uhn.fhir.jpa.provider.SubscriptionTriggeringProvider;
import ca.uhn.fhir.jpa.provider.TerminologyUploaderProvider;
import ca.uhn.fhir.jpa.provider.dstu3.JpaConformanceProviderDstu3;
import ca.uhn.fhir.jpa.provider.dstu3.JpaSystemProviderDstu3;
import ca.uhn.fhir.jpa.provider.dstu3.TerminologyUploaderProviderDstu3;
import ca.uhn.fhir.jpa.provider.r4.JpaConformanceProviderR4;
import ca.uhn.fhir.jpa.provider.r4.JpaSystemProviderR4;
import ca.uhn.fhir.jpa.provider.r4.TerminologyUploaderProviderR4;
import ca.uhn.fhir.jpa.provider.r5.JpaConformanceProviderR5;
import ca.uhn.fhir.jpa.provider.r5.JpaSystemProviderR5;
import ca.uhn.fhir.jpa.search.DatabaseBackedPagingProvider;
import ca.uhn.fhir.jpa.subscription.SubscriptionInterceptorLoader;
import ca.uhn.fhir.jpa.subscription.module.interceptor.SubscriptionDebugLogInterceptor;
@@ -27,9 +27,9 @@ import ca.uhn.fhir.model.dstu2.composite.MetaDt;
import ca.uhn.fhir.narrative.DefaultThymeleafNarrativeGenerator;
import ca.uhn.fhir.rest.server.HardcodedServerAddressStrategy;
import ca.uhn.fhir.rest.server.RestfulServer;
import ca.uhn.fhir.rest.server.interceptor.CorsInterceptor;
import ca.uhn.fhir.rest.server.interceptor.LoggingInterceptor;
import ca.uhn.fhir.rest.server.interceptor.ResponseHighlighterInterceptor;
import ca.uhn.fhir.rest.server.interceptor.*;
import ca.uhn.fhir.validation.IValidatorModule;
import ca.uhn.fhir.validation.ResultSeverityEnum;
import org.hl7.fhir.dstu3.model.Bundle;
import org.hl7.fhir.dstu3.model.Meta;
import org.springframework.context.ApplicationContext;
@@ -37,6 +37,7 @@ import org.springframework.web.cors.CorsConfiguration;
import javax.servlet.ServletException;
import java.util.Arrays;
import java.util.Collections;
import java.util.Set;
public class JpaRestfulServer extends RestfulServer {
@@ -76,6 +77,9 @@ public class JpaRestfulServer extends RestfulServer {
} else if (fhirVersion == FhirVersionEnum.R4) {
resourceProviders = appCtx.getBean("myResourceProvidersR4", ResourceProviderFactory.class);
systemProvider = appCtx.getBean("mySystemProviderR4", JpaSystemProviderR4.class);
} else if (fhirVersion == FhirVersionEnum.R5) {
resourceProviders = appCtx.getBean("myResourceProvidersR5", ResourceProviderFactory.class);
systemProvider = appCtx.getBean("mySystemProviderR5", JpaSystemProviderR5.class);
} else {
throw new IllegalStateException();
}
@@ -108,6 +112,11 @@ public class JpaRestfulServer extends RestfulServer {
JpaConformanceProviderR4 confProvider = new JpaConformanceProviderR4(this, systemDao, appCtx.getBean(DaoConfig.class));
confProvider.setImplementationDescription("HAPI FHIR R4 Server");
setServerConformanceProvider(confProvider);
} else if (fhirVersion == FhirVersionEnum.R5) {
IFhirSystemDao<org.hl7.fhir.r5.model.Bundle, org.hl7.fhir.r5.model.Meta> systemDao = appCtx.getBean("mySystemDaoR5", IFhirSystemDao.class);
JpaConformanceProviderR5 confProvider = new JpaConformanceProviderR5(this, systemDao, appCtx.getBean(DaoConfig.class));
confProvider.setImplementationDescription("HAPI FHIR R5 Server");
setServerConformanceProvider(confProvider);
} else {
throw new IllegalStateException();
}
@@ -179,11 +188,7 @@ public class JpaRestfulServer extends RestfulServer {
* with this feature.
*/
if (false) { // <-- DISABLED RIGHT NOW
if (fhirVersion == FhirVersionEnum.DSTU3) {
registerProvider(appCtx.getBean(TerminologyUploaderProviderDstu3.class));
} else if (fhirVersion == FhirVersionEnum.R4) {
registerProvider(appCtx.getBean(TerminologyUploaderProviderR4.class));
}
registerProvider(appCtx.getBean(TerminologyUploaderProvider.class));
}
// If you want to enable the $trigger-subscription operation to allow
@@ -244,6 +249,38 @@ public class JpaRestfulServer extends RestfulServer {
BinaryStorageInterceptor binaryStorageInterceptor = appCtx.getBean(BinaryStorageInterceptor.class);
getInterceptorService().registerInterceptor(binaryStorageInterceptor);
}
// Validation
IValidatorModule validatorModule;
switch (fhirVersion) {
case DSTU3:
validatorModule = appCtx.getBean("myInstanceValidatorDstu3", IValidatorModule.class);
break;
case R4:
validatorModule = appCtx.getBean("myInstanceValidatorR4", IValidatorModule.class);
break;
case R5:
validatorModule = appCtx.getBean("myInstanceValidatorR5", IValidatorModule.class);
break;
default:
validatorModule = null;
break;
}
if (validatorModule != null) {
if (HapiProperties.getValidateRequestsEnabled()) {
RequestValidatingInterceptor interceptor = new RequestValidatingInterceptor();
interceptor.setFailOnSeverity(ResultSeverityEnum.ERROR);
interceptor.setValidatorModules(Collections.singletonList(validatorModule));
registerInterceptor(interceptor);
}
if (HapiProperties.getValidateResponsesEnabled()) {
ResponseValidatingInterceptor interceptor = new ResponseValidatingInterceptor();
interceptor.setFailOnSeverity(ResultSeverityEnum.ERROR);
interceptor.setValidatorModules(Collections.singletonList(validatorModule));
registerInterceptor(interceptor);
}
}
}
}

12
src/main/resources/hapi.properties
View File

@@ -39,6 +39,18 @@ server.name=Local Tester
server.id=home
test.port=
###################################################
# Validation
###################################################
# Should all incoming requests be validated
validation.requests.enabled=false
# Should outgoing responses be validated
validation.responses.enabled=false
###################################################
# Supported Resources
###################################################
# Enable the following property if you want to customize the
# list of resources that is supported by the server (i.e. to
# disable specific resources)