Add repository validating interceptor, and update for EMPI->MDM rename
This commit is contained in:
jamesagnew
@@ -12,8 +12,12 @@ import org.eclipse.jetty.websocket.api.Session;
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import org.eclipse.jetty.websocket.client.ClientUpgradeRequest;
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import org.eclipse.jetty.websocket.client.WebSocketClient;
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import org.hl7.fhir.instance.model.api.IIdType;
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import org.hl7.fhir.r4.model.*;
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import org.hl7.fhir.r4.model.Bundle;
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import org.hl7.fhir.r4.model.Observation;
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import org.hl7.fhir.r4.model.Patient;
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import org.hl7.fhir.r4.model.Subscription;
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import org.junit.jupiter.api.BeforeEach;
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import org.junit.jupiter.api.Order;
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import org.junit.jupiter.api.Test;
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import org.junit.jupiter.api.extension.ExtendWith;
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import org.springframework.boot.test.context.SpringBootTest;
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@@ -21,146 +25,145 @@ import org.springframework.boot.web.server.LocalServerPort;
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import org.springframework.test.context.junit.jupiter.SpringExtension;
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import java.net.URI;
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import java.util.Collection;
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import java.util.List;
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import java.util.Optional;
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import java.util.concurrent.Future;
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import java.util.concurrent.TimeUnit;
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import static ca.uhn.fhir.util.TestUtil.waitForSize;
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import static java.util.Comparator.comparing;
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import static org.awaitility.Awaitility.await;
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import static org.hamcrest.Matchers.equalTo;
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import static org.junit.jupiter.api.Assertions.assertEquals;
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import static org.junit.jupiter.api.Assertions.assertTrue;
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import static org.junit.jupiter.api.Assertions.assertNotNull;
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@ExtendWith(SpringExtension.class)
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@SpringBootTest(webEnvironment = SpringBootTest.WebEnvironment.RANDOM_PORT, classes = Application.class, properties =
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{
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"spring.batch.job.enabled=false",
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"spring.datasource.url=jdbc:h2:mem:dbr4",
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"hapi.fhir.fhir_version=r4",
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"hapi.fhir.subscription.websocket_enabled=true",
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"hapi.fhir.empi_enabled=true",
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//Override is currently required when using Empi as the construction of the Empi beans are ambiguous as they are constructed multiple places. This is evident when running in a spring boot environment
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"spring.main.allow-bean-definition-overriding=true"
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})
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{
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"spring.batch.job.enabled=false",
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"spring.datasource.url=jdbc:h2:mem:dbr4",
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"hapi.fhir.enable_repository_validating_interceptor=true",
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"hapi.fhir.fhir_version=r4",
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"hapi.fhir.subscription.websocket_enabled=true",
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"hapi.fhir.mdm_enabled=true",
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//Override is currently required when using MDM as the construction of the MDM beans are ambiguous as they are constructed multiple places. This is evident when running in a spring boot environment
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"spring.main.allow-bean-definition-overriding=true"
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})
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public class ExampleServerR4IT {
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private static final org.slf4j.Logger ourLog = org.slf4j.LoggerFactory.getLogger(ExampleServerDstu2IT.class);
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private IGenericClient ourClient;
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private FhirContext ourCtx;
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private static final org.slf4j.Logger ourLog = org.slf4j.LoggerFactory.getLogger(ExampleServerDstu2IT.class);
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private IGenericClient ourClient;
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private FhirContext ourCtx;
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@LocalServerPort
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private int port;
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@LocalServerPort
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private int port;
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@Test
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void testCreateAndRead() {
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@Test
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@Order(0)
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void testCreateAndRead() {
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String methodName = "testCreateResourceConditional";
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String methodName = "testCreateResourceConditional";
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Patient pt = new Patient();
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pt.setActive(true);
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pt.getBirthDateElement().setValueAsString("2020-01-01");
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pt.addIdentifier().setSystem("http://foo").setValue("12345");
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pt.addName().setFamily(methodName);
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IIdType id = ourClient.create().resource(pt).execute().getId();
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Patient pt = new Patient();
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pt.setActive(true);
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pt.getBirthDateElement().setValueAsString("2020-01-01");
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pt.addIdentifier().setSystem("http://foo").setValue("12345");
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pt.addName().setFamily(methodName);
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IIdType id = ourClient.create().resource(pt).execute().getId();
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Patient pt2 = ourClient.read().resource(Patient.class).withId(id).execute();
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assertEquals(methodName, pt2.getName().get(0).getFamily());
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Patient pt2 = ourClient.read().resource(Patient.class).withId(id).execute();
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assertEquals(methodName, pt2.getName().get(0).getFamily());
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// Test EMPI
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// Test MDM
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// Wait until the EMPI message has been processed
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await().until(() -> getPeople().size() > 0);
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List<Person> persons = getPeople();
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// Wait until the MDM message has been processed
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await().until(() -> getPatients().size(), equalTo(2));
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List<Patient> persons = getPatients();
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Patient goldenRecord = persons.get(0);
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// Verify a Person was created that links to our Patient
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Optional<String> personLinkToCreatedPatient = persons.stream()
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.map(Person::getLink)
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.flatMap(Collection::stream)
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.map(Person.PersonLinkComponent::getTarget)
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.map(Reference::getReference)
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.filter(pid -> id.toUnqualifiedVersionless().getValue().equals(pid))
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.findAny();
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assertTrue(personLinkToCreatedPatient.isPresent());
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}
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// Verify that a golden record Patient was created
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assertNotNull(goldenRecord.getMeta().getTag("http://hapifhir.io/fhir/NamingSystem/mdm-record-status", "GOLDEN_RECORD"));
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}
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private List<Person> getPeople() {
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Bundle bundle = ourClient.search().forResource(Person.class).cacheControl(new CacheControlDirective().setNoCache(true)).returnBundle(Bundle.class).execute();
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return BundleUtil.toListOfResourcesOfType(ourCtx, bundle, Person.class);
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}
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private List<Patient> getPatients() {
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Bundle bundle = ourClient.search().forResource(Patient.class).cacheControl(new CacheControlDirective().setNoCache(true)).returnBundle(Bundle.class).execute();
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List<Patient> retVal = BundleUtil.toListOfResourcesOfType(ourCtx, bundle, Patient.class);
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retVal.sort(comparing(o -> ((Patient) o).getMeta().getLastUpdated()).reversed());
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return retVal;
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}
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@Test
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public void testWebsocketSubscription() throws Exception {
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/*
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* Create subscription
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*/
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Subscription subscription = new Subscription();
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subscription.setReason("Monitor new neonatal function (note, age will be determined by the monitor)");
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subscription.setStatus(Subscription.SubscriptionStatus.REQUESTED);
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subscription.setCriteria("Observation?status=final");
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@Test
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@Order(1)
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public void testWebsocketSubscription() throws Exception {
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/*
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* Create subscription
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*/
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Subscription subscription = new Subscription();
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subscription.setReason("Monitor new neonatal function (note, age will be determined by the monitor)");
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subscription.setStatus(Subscription.SubscriptionStatus.REQUESTED);
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subscription.setCriteria("Observation?status=final");
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Subscription.SubscriptionChannelComponent channel = new Subscription.SubscriptionChannelComponent();
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channel.setType(Subscription.SubscriptionChannelType.WEBSOCKET);
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channel.setPayload("application/json");
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subscription.setChannel(channel);
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Subscription.SubscriptionChannelComponent channel = new Subscription.SubscriptionChannelComponent();
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channel.setType(Subscription.SubscriptionChannelType.WEBSOCKET);
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channel.setPayload("application/json");
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subscription.setChannel(channel);
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MethodOutcome methodOutcome = ourClient.create().resource(subscription).execute();
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IIdType mySubscriptionId = methodOutcome.getId();
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MethodOutcome methodOutcome = ourClient.create().resource(subscription).execute();
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IIdType mySubscriptionId = methodOutcome.getId();
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// Wait for the subscription to be activated
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await().until(() -> activeSubscriptionCount() == 3);
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// Wait for the subscription to be activated
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await().until(() -> activeSubscriptionCount() == 3);
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/*
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* Attach websocket
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*/
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/*
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* Attach websocket
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*/
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WebSocketClient myWebSocketClient = new WebSocketClient();
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SocketImplementation mySocketImplementation = new SocketImplementation(mySubscriptionId.getIdPart(), EncodingEnum.JSON);
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WebSocketClient myWebSocketClient = new WebSocketClient();
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SocketImplementation mySocketImplementation = new SocketImplementation(mySubscriptionId.getIdPart(), EncodingEnum.JSON);
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myWebSocketClient.start();
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URI echoUri = new URI("ws://localhost:" + port + "/websocket");
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ClientUpgradeRequest request = new ClientUpgradeRequest();
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ourLog.info("Connecting to : {}", echoUri);
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Future<Session> connection = myWebSocketClient.connect(mySocketImplementation, echoUri, request);
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Session session = connection.get(2, TimeUnit.SECONDS);
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myWebSocketClient.start();
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URI echoUri = new URI("ws://localhost:" + port + "/websocket");
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ClientUpgradeRequest request = new ClientUpgradeRequest();
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ourLog.info("Connecting to : {}", echoUri);
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Future<Session> connection = myWebSocketClient.connect(mySocketImplementation, echoUri, request);
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Session session = connection.get(2, TimeUnit.SECONDS);
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ourLog.info("Connected to WS: {}", session.isOpen());
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ourLog.info("Connected to WS: {}", session.isOpen());
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/*
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* Create a matching resource
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*/
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Observation obs = new Observation();
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obs.setStatus(Observation.ObservationStatus.FINAL);
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ourClient.create().resource(obs).execute();
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/*
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* Create a matching resource
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*/
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Observation obs = new Observation();
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obs.setStatus(Observation.ObservationStatus.FINAL);
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ourClient.create().resource(obs).execute();
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// Give some time for the subscription to deliver
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Thread.sleep(2000);
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// Give some time for the subscription to deliver
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Thread.sleep(2000);
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/*
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* Ensure that we receive a ping on the websocket
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*/
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waitForSize(1, () -> mySocketImplementation.myPingCount);
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/*
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* Ensure that we receive a ping on the websocket
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*/
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waitForSize(1, () -> mySocketImplementation.myPingCount);
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/*
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* Clean up
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*/
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ourClient.delete().resourceById(mySubscriptionId).execute();
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}
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/*
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* Clean up
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*/
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ourClient.delete().resourceById(mySubscriptionId).execute();
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}
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private int activeSubscriptionCount() {
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return ourClient.search().forResource(Subscription.class).where(Subscription.STATUS.exactly().code("active")).cacheControl(new CacheControlDirective().setNoCache(true)).returnBundle(Bundle.class).execute().getEntry().size();
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}
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private int activeSubscriptionCount() {
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return ourClient.search().forResource(Subscription.class).where(Subscription.STATUS.exactly().code("active")).cacheControl(new CacheControlDirective().setNoCache(true)).returnBundle(Bundle.class).execute().getEntry().size();
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}
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@BeforeEach
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void beforeEach() {
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@BeforeEach
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void beforeEach() {
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ourCtx = FhirContext.forR4();
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ourCtx.getRestfulClientFactory().setServerValidationMode(ServerValidationModeEnum.NEVER);
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ourCtx.getRestfulClientFactory().setSocketTimeout(1200 * 1000);
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String ourServerBase = "http://localhost:" + port + "/fhir/";
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ourClient = ourCtx.newRestfulGenericClient(ourServerBase);
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ourClient.registerInterceptor(new LoggingInterceptor(true));
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}
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ourCtx = FhirContext.forR4();
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ourCtx.getRestfulClientFactory().setServerValidationMode(ServerValidationModeEnum.NEVER);
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ourCtx.getRestfulClientFactory().setSocketTimeout(1200 * 1000);
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String ourServerBase = "http://localhost:" + port + "/fhir/";
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ourClient = ourCtx.newRestfulGenericClient(ourServerBase);
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ourClient.registerInterceptor(new LoggingInterceptor(true));
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}
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}
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