Feature/elastic on boot (#856)
* Fixing up elastic for Spring Boot * Adding class shadowing for issue reported on https://github.com/hapifhir/hapi-fhir/pull/7242 * Formatting * corrected condition * fix import * fix2 * crappy fix3 * fix actuator endpoint * Simplified expression * Ironed out a few legacy issues * more rework * major overhaul * Disabling invalid test * Reverting back to defaults for text searches * Added default hibernate settings from the EnvironmentHelper * Formatting * Added comment on class shadow * Added missing default
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Jens Kristian Villadsen
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9576cfa9b5
@@ -9,12 +9,16 @@ server:
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#Adds the option to go to e.g. http://localhost:8080/actuator/health for seeing the running configuration
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#see https://docs.spring.io/spring-boot/docs/current/reference/html/actuator.html#actuator.endpoints
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management:
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health:
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elasticsearch:
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enabled: false
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#The following configuration will enable the actuator endpoints at /actuator/health, /actuator/info, /actuator/prometheus, /actuator/metrics. For security purposes, only /actuator/health is enabled by default.
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endpoints:
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enabled-by-default: false
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web:
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exposure:
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include: 'health' # or e.g. 'info,health,prometheus,metrics' or '*' for all
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# expose only health (default) — change to [health,info,prometheus,metrics] if you want them reachable
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include: health
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endpoint:
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info:
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enabled: true
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@@ -63,21 +67,13 @@ spring:
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mcp:
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server:
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# Will be enabled once spring-ai-starter-mcp-server is added as dependency
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# name: FHIR MCP Server
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# version: 1.0.0
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# type: SYNC
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# instructions: "This server provides access to a FHIR RESTful API. You can use it to query FHIR resources, perform operations, and retrieve data in a structured format."
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# sse-message-endpoint: /mcp/message
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# capabilities:
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# tool: true
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# resource: true
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# prompt: true
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# completion: true
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# stdio: false
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name: FHIR MCP Server
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version: 1.0.0
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instructions: "This server provides access to a FHIR RESTful API. You can use it to query FHIR resources, perform operations, and retrieve data in a structured format."
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enabled: true
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streamable-http:
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mcp-endpoint: /mcp/messages
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#endpoint: /mcp
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#schema:
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# fhir-enabled: true
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@@ -93,51 +89,74 @@ spring:
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# {{schema}}
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#base-url: /api/v1
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autoconfigure:
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# This exclude is only needed for setups not using Elasticsearch where the elasticsearch sniff is not needed.
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exclude: org.springframework.boot.autoconfigure.elasticsearch.ElasticsearchRestClientAutoConfiguration
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main:
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allow-bean-definition-overriding: false
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allow-circular-references: true
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flyway:
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enabled: false
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baselineOnMigrate: true
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baseline-on-migrate: true
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fail-on-missing-locations: false
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datasource:
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#url: 'jdbc:h2:file:./target/database/h2'
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url: jdbc:h2:mem:test_mem
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username: sa
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password: null
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driverClassName: org.h2.Driver
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max-active: 15
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driver-class-name: org.h2.Driver
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# database connection pool size
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hikari:
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maximum-pool-size: 10
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# elasticsearch:
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# uris: http://localhost:9200
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# username: elastic
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# password: changeme
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jpa:
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properties:
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hibernate.format_sql: false
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hibernate.show_sql: false
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hibernate:
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hbm2ddl:
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auto: update
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jdbc:
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batch_size: 20
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cache:
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use_query_cache: false
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use_second_level_cache: false
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use_structured_entries: false
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use_minimal_puts: false
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format_sql: false
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show_sql: false
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#If using H2, then supply the value of ca.uhn.fhir.jpa.model.dialect.HapiFhirH2Dialect
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#If using postgres, then supply the value of ca.uhn.fhir.jpa.model.dialect.HapiFhirPostgresDialect
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#dialect: ca.uhn.fhir.jpa.model.dialect.HapiFhirPostgresDialect
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dialect: ca.uhn.fhir.jpa.model.dialect.HapiFhirH2Dialect
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search:
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enabled: true
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schema_management:
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strategy: create
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### lucene parameters
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backend:
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type: lucene
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directory:
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type: local-filesystem
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root: target/lucenefiles
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analysis:
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configurer: ca.uhn.fhir.jpa.search.HapiHSearchAnalysisConfigurers$HapiLuceneAnalysisConfigurer
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#Hibernate dialect is automatically detected except Postgres and H2.
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#If using H2, then supply the value of ca.uhn.fhir.jpa.model.dialect.HapiFhirH2Dialect
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#If using postgres, then supply the value of ca.uhn.fhir.jpa.model.dialect.HapiFhirPostgresDialect
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hibernate.dialect: ca.uhn.fhir.jpa.model.dialect.HapiFhirH2Dialect
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# hibernate.hbm2ddl.auto: update
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# hibernate.jdbc.batch_size: 20
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# hibernate.cache.use_query_cache: false
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# hibernate.cache.use_second_level_cache: false
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# hibernate.cache.use_structured_entries: false
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# hibernate.cache.use_minimal_puts: false
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### elastic parameters ===> see also elasticsearch section below <===
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# backend:
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# type: elasticsearch
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# discovery: true
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# analysis:
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# configurer: ca.uhn.fhir.jpa.search.HapiHSearchAnalysisConfigurers$HapiElasticAnalysisConfigurer
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# hosts: localhost:9200
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# protocol: http
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# username: elastic
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# password: changeme
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# refresh_after_write: true
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### These settings will enable fulltext search with lucene or elastic
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hibernate.search.enabled: false
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### lucene parameters
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# hibernate.search.backend.type: lucene
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# hibernate.search.backend.analysis.configurer: ca.uhn.fhir.jpa.search.HapiHSearchAnalysisConfigurers$HapiLuceneAnalysisConfigurer
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# hibernate.search.backend.directory.type: local-filesystem
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# hibernate.search.backend.directory.root: target/lucenefiles
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# hibernate.search.backend.lucene_version: lucene_current
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### elastic parameters ===> see also elasticsearch section below <===
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# hibernate.search.backend.type: elasticsearch
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# hibernate.search.backend.analysis.configurer: ca.uhn.fhir.jpa.search.HapiHSearchAnalysisConfigurers$HapiElasticAnalysisConfigurer
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hapi:
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fhir:
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### This flag when enabled to true, will avail evaluate measure operations from CR Module.
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@@ -201,42 +220,42 @@ hapi:
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fhir_version: R4
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### Flag is false by default. This flag enables runtime installation of IG's.
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ig_runtime_upload_enabled: false
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### This flag when enabled to true, will avail evaluate measure operations from CR Module.
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### This flag when enabled to true, will avail evaluate measure operations from CR Module.
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### enable to use the ApacheProxyAddressStrategy which uses X-Forwarded-* headers
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### to determine the FHIR server address
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# use_apache_address_strategy: false
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### forces the use of the https:// protocol for the returned server address.
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### alternatively, it may be set using the X-Forwarded-Proto header.
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# use_apache_address_strategy_https: false
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### enables the server to overwrite defaults on HTML, css, etc. under the url pattern of eg. /content/custom **
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### Folder with custom content MUST be named custom. If omitted then default content applies
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#custom_content_path: ./custom
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### enables the server host custom content. If e.g. the value ./configs/app is supplied then the content
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### will be served under /web/app
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#app_content_path: ./configs/app
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### enable to set the Server URL
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# server_address: http://hapi.fhir.org/baseR4
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# defer_indexing_for_codesystems_of_size: 101
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### Flag is true by default. This flag filters resources during package installation, allowing only those resources with a valid status (e.g. active) to be installed.
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# validate_resource_status_for_package_upload: false
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# install_transitive_ig_dependencies: true
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#implementationguides:
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### example from registry (packages.fhir.org)
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# swiss:
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# name: swiss.mednet.fhir
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# version: 0.8.0
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# reloadExisting: false
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# installMode: STORE_AND_INSTALL
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# example not from registry
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# ips_1_0_0:
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# packageUrl: https://costateixeira.github.io/smart-ips-pilgrimage-fulltest/package.tgz
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# name: smart.who.int.ips-pilgrimage-test
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# version: 0.1.0
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### enable to use the ApacheProxyAddressStrategy which uses X-Forwarded-* headers
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### to determine the FHIR server address
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# use_apache_address_strategy: false
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### forces the use of the https:// protocol for the returned server address.
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### alternatively, it may be set using the X-Forwarded-Proto header.
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# use_apache_address_strategy_https: false
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### enables the server to overwrite defaults on HTML, css, etc. under the url pattern of eg. /content/custom **
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### Folder with custom content MUST be named custom. If omitted then default content applies
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#custom_content_path: ./custom
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### enables the server host custom content. If e.g. the value ./configs/app is supplied then the content
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### will be served under /web/app
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#app_content_path: ./configs/app
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### enable to set the Server URL
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# server_address: http://hapi.fhir.org/baseR4
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# defer_indexing_for_codesystems_of_size: 101
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### Flag is true by default. This flag filters resources during package installation, allowing only those resources with a valid status (e.g. active) to be installed.
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# validate_resource_status_for_package_upload: false
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# install_transitive_ig_dependencies: true
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#implementationguides:
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### example from registry (packages.fhir.org)
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# swiss:
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# name: swiss.mednet.fhir
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# version: 0.8.0
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# reloadExisting: false
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# installMode: STORE_AND_INSTALL
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# example not from registry
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# ips_1_0_0:
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# packageUrl: https://costateixeira.github.io/smart-ips-pilgrimage-fulltest/package.tgz
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# name: smart.who.int.ips-pilgrimage-test
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# version: 0.1.0
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# installMode: STORE_AND_INSTALL
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# additionalResourceFolders:
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# - example
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# - example2
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# - example2
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# supported_resource_types:
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# - Patient
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# - Observation
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@@ -309,21 +328,21 @@ hapi:
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- http://loinc.org/*
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- https://loinc.org/*
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### Uncomment the following section, and any sub-properties you need in order to enable
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### partitioning support on this server.
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#partitioning:
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# allow_references_across_partitions: false
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# partitioning_include_in_search_hashes: false
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# default_partition_id: 0
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### Uncomment the following section, and any sub-properties you need in order to enable
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### partitioning support on this server.
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#partitioning:
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# allow_references_across_partitions: false
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# partitioning_include_in_search_hashes: false
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# default_partition_id: 0
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### Enable the following setting to enable Database Partitioning Mode
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### See: https://hapifhir.io/hapi-fhir/docs/server_jpa_partitioning/db_partition_mode.html
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# database_partition_mode_enabled: true
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# database_partition_mode_enabled: true
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### Partition Style: Partitioning requires a partition interceptor which helps the server
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### select which partition(s) should be accessed for a given request. You can supply your
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### own interceptor (see https://hapifhir.io/hapi-fhir/docs/server_jpa_partitioning/partitioning.html#partition-interceptors )
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### but the following setting can also be used to use a built-in form.
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### Patient ID Partitioning Mode uses the patient/subject ID to determine the partition
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# patient_id_partitioning_mode: true
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# patient_id_partitioning_mode: true
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### Request tenant mode can be used for a multi-tenancy setup where the request path is
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### expected to have an additional path element, e.g. GET http://example.com/fhir/TENANT-ID/Patient/A
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# request_tenant_partitioning_mode: false
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@@ -432,14 +451,3 @@ hapi:
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### 1: NORMALIZED_QUANTITY_STORAGE_SUPPORTED
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### 2: NORMALIZED_QUANTITY_SEARCH_SUPPORTED
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# normalized_quantity_search_level: 2
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#elasticsearch:
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# debug:
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# pretty_print_json_log: false
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# refresh_after_write: false
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# enabled: false
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# password: SomePassword
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# required_index_status: YELLOW
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# rest_url: 'localhost:9200'
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# protocol: 'http'
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# schema_management_strategy: CREATE
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# username: SomeUsername
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