Helm chart dependency updates and support for extraVolumes and -Mounts (#766)

* Helm chart updates

* set target branch to master for chart testing

charts/hapi-fhir-jpaserver/templates/deployment.yaml

@@ -31,12 +31,17 @@ spec:
         {{- toYaml .Values.podSecurityContext | nindent 8 }}
       initContainers:
         - name: wait-for-db-to-be-ready
-          image: docker.io/bitnami/postgresql:16.4.0-debian-12-r1@sha256:fb3d0a34e7b9f3e59442aa1fa2e6377857147c09ae754ddd5d4bb3fc0dd137da
+          image: docker.io/bitnami/postgresql:17.2.0-debian-12-r3@sha256:4de5c47eb98dd8fe09abdcbc2264984486ee8196e90902fb354f5d2ab97e8921
           imagePullPolicy: IfNotPresent
           {{- with .Values.restrictedContainerSecurityContext }}
           securityContext:
             {{- toYaml . | nindent 12 }}
           {{- end }}
+          {{- if .Values.initContainers.resources }}
+          resources: {{- toYaml .Values.initContainers.resources | nindent 12 }}
+          {{- else if ne .Values.initContainers.resourcesPreset "none" }}
+          resources: {{- include "common.resources.preset" (dict "type" .Values.initContainers.resourcesPreset) | nindent 12 }}
+          {{- end }}
           env:
             - name: PGHOST
               value: "{{ include "hapi-fhir-jpaserver.database.host" . }}"
@@ -76,8 +81,11 @@ spec:
           readinessProbe:
             {{- toYaml . | nindent 12 }}
           {{- end }}
-          resources:
-            {{- toYaml .Values.resources | nindent 12 }}
+          {{- if .Values.resources }}
+          resources: {{- toYaml .Values.resources | nindent 12 }}
+          {{- else if ne .Values.resourcesPreset "none" }}
+          resources: {{- include "common.resources.preset" (dict "type" .Values.resourcesPreset) | nindent 12 }}
+          {{- end }}
           env:
             - name: SPRING_DATASOURCE_URL
               value: {{ include "hapi-fhir-jpaserver.database.jdbcUrl" $ }}
@@ -98,6 +106,8 @@ spec:
               value: "true"
             - name: MANAGEMENT_SERVER_PORT
               value: "8081"
+            - name: MANAGEMENT_ENDPOINTS_WEB_EXPOSURE_INCLUDE
+              value: "health,prometheus"
             {{- if .Values.extraConfig }}
             - name: SPRING_CONFIG_IMPORT
               value: "/app/config/application-extra.yaml"
@@ -116,6 +126,9 @@ spec:
               readOnly: true
               subPath: application-extra.yaml
           {{- end }}
+          {{- if .Values.extraVolumeMounts }}
+            {{- include "common.tplvalues.render" (dict "value" .Values.extraVolumeMounts "context" $) | nindent 12 }}
+          {{- end }}
       {{- with .Values.nodeSelector }}
       nodeSelector:
         {{- toYaml . | nindent 8 }}
@@ -142,3 +155,6 @@ spec:
           configMap:
             name: {{ include "hapi-fhir-jpaserver.fullname" . }}-application-config
       {{- end }}
+      {{- if .Values.extraVolumes }}
+      {{- include "common.tplvalues.render" (dict "value" .Values.extraVolumes "context" $) | nindent 8 }}
+      {{- end }}

charts/hapi-fhir-jpaserver/templates/tests/test-endpoints.yaml

@@ -5,11 +5,14 @@ metadata:
   labels:
     {{- include "hapi-fhir-jpaserver.labels" . | nindent 4 }}
     {{ include "hapi-fhir-jpaserver.fullname" . }}-client: "true"
+    app.kubernetes.io/component: tests
   annotations:
     "helm.sh/hook": test
 spec:
   restartPolicy: Never
   automountServiceAccountToken: {{ .Values.tests.automountServiceAccountToken }}
+  securityContext:
+    {{- toYaml .Values.tests.podSecurityContext | nindent 4 }}
   containers:
     - name: test-metadata-endpoint
       image: "{{ .Values.curl.image.registry }}/{{ .Values.curl.image.repository }}:{{ .Values.curl.image.tag }}"
@@ -19,9 +22,10 @@ spec:
       securityContext:
         {{- toYaml . | nindent 8 }}
       {{- end }}
-      {{- with .Values.tests.resources }}
-      resources:
-        {{- toYaml . | nindent 8 }}
+      {{- if .Values.tests.resources }}
+      resources: {{- toYaml .Values.tests.resources | nindent 10 }}
+      {{- else if ne .Values.tests.resourcesPreset "none" }}
+      resources: {{- include "common.resources.preset" (dict "type" .Values.tests.resourcesPreset) | nindent 10 }}
       {{- end }}
       livenessProbe:
         exec:
@@ -37,9 +41,10 @@ spec:
       securityContext:
         {{- toYaml . | nindent 8 }}
       {{- end }}
-      {{- with .Values.tests.resources }}
-      resources:
-        {{- toYaml . | nindent 8 }}
+      {{- if .Values.tests.resources }}
+      resources: {{- toYaml .Values.tests.resources | nindent 10 }}
+      {{- else if ne .Values.tests.resourcesPreset "none" }}
+      resources: {{- include "common.resources.preset" (dict "type" .Values.tests.resourcesPreset) | nindent 10 }}
       {{- end }}
       livenessProbe:
         exec:
@@ -55,9 +60,10 @@ spec:
       securityContext:
         {{- toYaml . | nindent 8 }}
       {{- end }}
-      {{- with .Values.tests.resources }}
-      resources:
-        {{- toYaml . | nindent 8 }}
+      {{- if .Values.tests.resources }}
+      resources: {{- toYaml .Values.tests.resources | nindent 10 }}
+      {{- else if ne .Values.tests.resourcesPreset "none" }}
+      resources: {{- include "common.resources.preset" (dict "type" .Values.tests.resourcesPreset) | nindent 10 }}
       {{- end }}
       livenessProbe:
         exec: