Merge pull request #684 from hapifhir/rel_7_3_tracking

Update to HAPI 7.4.0 (tracking branch)

pom.xml

@@ -14,7 +14,7 @@
     <parent>
         <groupId>ca.uhn.hapi.fhir</groupId>
         <artifactId>hapi-fhir</artifactId>
-        <version>7.2.1</version>
+        <version>7.4.0</version>
     </parent>
 
     <artifactId>hapi-fhir-jpaserver-starter</artifactId>

src/main/java/ca/uhn/fhir/jpa/starter/common/FhirServerConfigCommon.java

@@ -6,6 +6,7 @@ import ca.uhn.fhir.jpa.binstore.DatabaseBinaryContentStorageSvcImpl;
 import ca.uhn.fhir.jpa.config.HibernatePropertiesProvider;
 import ca.uhn.fhir.jpa.model.config.PartitionSettings;
 import ca.uhn.fhir.jpa.model.config.PartitionSettings.CrossPartitionReferenceMode;
+import ca.uhn.fhir.jpa.model.config.SubscriptionSettings;
 import ca.uhn.fhir.jpa.model.entity.StorageSettings;
 import ca.uhn.fhir.jpa.starter.AppProperties;
 import ca.uhn.fhir.jpa.starter.util.JpaHibernatePropertiesProvider;
@@ -87,6 +88,40 @@ public class FhirServerConfigCommon {
 		}
 	}
 
+	@Bean
+	public SubscriptionSettings subscriptionSettings(AppProperties appProperties) {
+		SubscriptionSettings subscriptionSettings = new SubscriptionSettings();
+		if (appProperties.getSubscription() != null) {
+			if (appProperties.getSubscription().getEmail() != null)
+				subscriptionSettings.setEmailFromAddress(
+					appProperties.getSubscription().getEmail().getFrom());
+
+			// Subscriptions are enabled by channel type
+			if (appProperties.getSubscription().getResthook_enabled()) {
+				ourLog.info("Enabling REST-hook subscriptions");
+				subscriptionSettings.addSupportedSubscriptionType(
+					org.hl7.fhir.dstu2.model.Subscription.SubscriptionChannelType.RESTHOOK);
+			}
+			if (appProperties.getSubscription().getEmail() != null) {
+				ourLog.info("Enabling email subscriptions");
+				subscriptionSettings.addSupportedSubscriptionType(
+					org.hl7.fhir.dstu2.model.Subscription.SubscriptionChannelType.EMAIL);
+			}
+			if (appProperties.getSubscription().getWebsocket_enabled()) {
+				ourLog.info("Enabling websocket subscriptions");
+				subscriptionSettings.addSupportedSubscriptionType(
+					org.hl7.fhir.dstu2.model.Subscription.SubscriptionChannelType.WEBSOCKET);
+			}
+
+		}
+		if (appProperties.getMdm_enabled()) {
+			// MDM requires the subscription of type message
+			ourLog.info("Enabling message subscriptions");
+			subscriptionSettings.addSupportedSubscriptionType(
+				org.hl7.fhir.dstu2.model.Subscription.SubscriptionChannelType.MESSAGE);
+		}
+		return subscriptionSettings;
+	}
 	/**
 	 * Configure FHIR properties around the JPA server via this bean
 	 */
@@ -114,10 +149,7 @@ public class FhirServerConfigCommon {
 		jpaStorageSettings.setDeleteExpungeEnabled(appProperties.getDelete_expunge_enabled());
 		jpaStorageSettings.setExpungeEnabled(appProperties.getExpunge_enabled());
 		jpaStorageSettings.setLanguageSearchParameterEnabled(appProperties.getLanguage_search_parameter_enabled());
-		if (appProperties.getSubscription() != null
-				&& appProperties.getSubscription().getEmail() != null)
-			jpaStorageSettings.setEmailFromAddress(
-					appProperties.getSubscription().getEmail().getFrom());
+
 
 		Integer maxFetchSize = appProperties.getMax_page_size();
 		jpaStorageSettings.setFetchSizeDefaultMaximum(maxFetchSize);
@@ -131,24 +163,7 @@ public class FhirServerConfigCommon {
 		Long retainCachedSearchesMinutes = appProperties.getRetain_cached_searches_mins();
 		jpaStorageSettings.setExpireSearchResultsAfterMillis(retainCachedSearchesMinutes * 60 * 1000);
 
-		if (appProperties.getSubscription() != null) {
-			// Subscriptions are enabled by channel type
-			if (appProperties.getSubscription().getResthook_enabled()) {
-				ourLog.info("Enabling REST-hook subscriptions");
-				jpaStorageSettings.addSupportedSubscriptionType(
-						org.hl7.fhir.dstu2.model.Subscription.SubscriptionChannelType.RESTHOOK);
-			}
-			if (appProperties.getSubscription().getEmail() != null) {
-				ourLog.info("Enabling email subscriptions");
-				jpaStorageSettings.addSupportedSubscriptionType(
-						org.hl7.fhir.dstu2.model.Subscription.SubscriptionChannelType.EMAIL);
-			}
-			if (appProperties.getSubscription().getWebsocket_enabled()) {
-				ourLog.info("Enabling websocket subscriptions");
-				jpaStorageSettings.addSupportedSubscriptionType(
-						org.hl7.fhir.dstu2.model.Subscription.SubscriptionChannelType.WEBSOCKET);
-			}
-		}
+
 
 		jpaStorageSettings.setFilterParameterEnabled(appProperties.getFilter_search_enabled());
 		jpaStorageSettings.setAdvancedHSearchIndexing(appProperties.getAdvanced_lucene_indexing());
@@ -204,13 +219,6 @@ public class FhirServerConfigCommon {
 		jpaStorageSettings.setBundleBatchPoolSize(appProperties.getBundle_batch_pool_size());
 		jpaStorageSettings.setBundleBatchPoolSize(appProperties.getBundle_batch_pool_max_size());
 
-		if (appProperties.getMdm_enabled()) {
-			// MDM requires the subscription of type message
-			ourLog.info("Enabling message subscriptions");
-			jpaStorageSettings.addSupportedSubscriptionType(
-					org.hl7.fhir.dstu2.model.Subscription.SubscriptionChannelType.MESSAGE);
-		}
-
 		storageSettings(appProperties, jpaStorageSettings);
 		return jpaStorageSettings;
 	}
@@ -251,10 +259,6 @@ public class FhirServerConfigCommon {
 		jpaStorageSettings.setAllowExternalReferences(appProperties.getAllow_external_references());
 		jpaStorageSettings.setDefaultSearchParamsCanBeOverridden(
 				appProperties.getAllow_override_default_search_params());
-		if (appProperties.getSubscription() != null
-				&& appProperties.getSubscription().getEmail() != null)
-			jpaStorageSettings.setEmailFromAddress(
-					appProperties.getSubscription().getEmail().getFrom());
 
 		jpaStorageSettings.setNormalizedQuantitySearchLevel(appProperties.getNormalized_quantity_search_level());
 

src/main/java/ca/uhn/fhir/jpa/starter/common/StarterJpaConfig.java

@@ -30,6 +30,7 @@ import ca.uhn.fhir.jpa.graphql.GraphQLProvider;
 import ca.uhn.fhir.jpa.interceptor.CascadingDeleteInterceptor;
 import ca.uhn.fhir.jpa.interceptor.validation.RepositoryValidatingInterceptor;
 import ca.uhn.fhir.jpa.ips.provider.IpsOperationProvider;
+import ca.uhn.fhir.jpa.model.config.SubscriptionSettings;
 import ca.uhn.fhir.jpa.packages.IPackageInstallerSvc;
 import ca.uhn.fhir.jpa.packages.PackageInstallationSpec;
 import ca.uhn.fhir.jpa.partition.PartitionManagementProvider;
@@ -252,6 +253,7 @@ public class StarterJpaConfig {
 			IJpaSystemProvider jpaSystemProvider,
 			ResourceProviderFactory resourceProviderFactory,
 			JpaStorageSettings jpaStorageSettings,
+			SubscriptionSettings subscriptionSettings,
 			ISearchParamRegistry searchParamRegistry,
 			IValidationSupport theValidationSupport,
 			DatabaseBackedPagingProvider databaseBackedPagingProvider,
@@ -378,7 +380,7 @@ public class StarterJpaConfig {
 
 		corsInterceptor.ifPresent(fhirServer::registerInterceptor);
 
-		if (jpaStorageSettings.getSupportedSubscriptionTypes().size() > 0) {
+		if (!subscriptionSettings.getSupportedSubscriptionTypes().isEmpty()) {
 			// Subscription debug logging
 			fhirServer.registerInterceptor(new SubscriptionDebugLogInterceptor());
 		}

src/test/java/ca/uhn/fhir/jpa/starter/ExampleServerDstu3IT.java

@@ -43,7 +43,6 @@ import static org.junit.jupiter.api.Assertions.assertTrue;
 		RepositoryConfig.class
 	}, properties =
   {
-	  "spring.profiles.include=storageSettingsTest",
      "spring.datasource.url=jdbc:h2:mem:dbr3",
      "hapi.fhir.fhir_version=dstu3",
 	  "hapi.fhir.cr_enabled=true",

src/test/java/ca/uhn/fhir/jpa/starter/ExampleServerR4IT.java

@@ -55,11 +55,10 @@ import static org.opencds.cqf.fhir.utility.r4.Parameters.stringPart;
 		NicknameServiceConfig.class,
 		RepositoryConfig.class
 	}, properties = {
-	"spring.profiles.include=storageSettingsTest",
 	"spring.datasource.url=jdbc:h2:mem:dbr4",
 	"hapi.fhir.enable_repository_validating_interceptor=true",
 	"hapi.fhir.fhir_version=r4",
-	//"hapi.fhir.subscription.websocket_enabled=true",
+	"hapi.fhir.subscription.websocket_enabled=true",
 	//"hapi.fhir.mdm_enabled=true",
 	"hapi.fhir.cr.enabled=true",
 	"hapi.fhir.cr.caregaps.section_author=Organization/alphora-author",
@@ -230,7 +229,7 @@ class ExampleServerR4IT implements IServerSupport {
 		IIdType mySubscriptionId = methodOutcome.getId();
 
 		// Wait for the subscription to be activated
-		await().atMost(1, TimeUnit.MINUTES).until(()->activeSubscriptionCount(), equalTo(initialActiveSubscriptionCount + 1));
+		await().atMost(1, TimeUnit.MINUTES).until(this::activeSubscriptionCount, equalTo(initialActiveSubscriptionCount + 1));
 
 		/*
 		 * Attach websocket

src/test/java/ca/uhn/fhir/jpa/starter/JpaStorageSettingsConfig.java

@@ -1,22 +0,0 @@
-package ca.uhn.fhir.jpa.starter;
-
-import ca.uhn.fhir.jpa.api.config.JpaStorageSettings;
-import org.hl7.fhir.dstu2.model.Subscription;
-import org.springframework.context.annotation.Bean;
-import org.springframework.context.annotation.Configuration;
-import org.springframework.context.annotation.Primary;
-import org.springframework.context.annotation.Profile;
-
-@Profile("storageSettingsTest")
-@Configuration
-public class JpaStorageSettingsConfig {
-	@Primary
-	@Bean
-	public JpaStorageSettings storageSettings() {
-		JpaStorageSettings retVal = new JpaStorageSettings();
-
-		retVal.addSupportedSubscriptionType(Subscription.SubscriptionChannelType.WEBSOCKET);
-		retVal.addSupportedSubscriptionType(Subscription.SubscriptionChannelType.MESSAGE);
-		return retVal;
-	}
-}

src/test/java/ca/uhn/fhir/jpa/starter/MdmTest.java

@@ -2,6 +2,7 @@ package ca.uhn.fhir.jpa.starter;
 
 import static org.assertj.core.api.Assertions.assertThat;
 
+import ca.uhn.fhir.jpa.model.config.SubscriptionSettings;
 import org.hl7.fhir.dstu2.model.Subscription.SubscriptionChannelType;
 import org.junit.jupiter.api.Test;
 import org.springframework.beans.factory.annotation.Autowired;
@@ -21,9 +22,12 @@ class MdmTest {
 	@Autowired
 	JpaStorageSettings jpaStorageSettings;
 
+	@Autowired
+	SubscriptionSettings subscriptionSettings;
+
 	@Test
 	void testApplicationStartedSuccessfully() {
 		assertThat(nicknameService).isNotNull();
-		assertThat(jpaStorageSettings.getSupportedSubscriptionTypes()).contains(SubscriptionChannelType.MESSAGE);
+		assertThat(subscriptionSettings.getSupportedSubscriptionTypes()).contains(SubscriptionChannelType.MESSAGE);
 	}
 }

src/test/smoketest/plain_server.http

@@ -87,7 +87,7 @@ Content-Type: application/json
     });
     const batch_patient_location = response.body.entry[0].response.location;
     const indexOfHistory = batch_patient_location.lastIndexOf("/_history");
-    trimmed_location = batch_patient_location.substring(0, indexOfHistory);
+    var trimmed_location = batch_patient_location.substring(0, indexOfHistory);
     trimmed_location = trimmed_location.replace("Patient/", "")
     client.global.set("batch_patient_id", trimmed_location);
 %}