Merge branch 'master' into master
This commit is contained in:
James Agnew
GitHub
11
pom.xml
11
pom.xml
@@ -11,7 +11,7 @@
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<parent>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir</artifactId>
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<version>3.7.0-SNAPSHOT</version>
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<version>3.7.0</version>
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</parent>
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<groupId>ca.uhn.hapi.fhir.demo</groupId>
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@@ -255,15 +255,6 @@
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</configuration>
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</plugin>
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<!-- This plugin is just a part of the HAPI internal build process, you do not need to incude it in your own projects -->
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<plugin>
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<groupId>org.apache.maven.plugins</groupId>
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<artifactId>maven-deploy-plugin</artifactId>
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<configuration>
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<skip>true</skip>
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</configuration>
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</plugin>
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<!-- This is to run the integration tests -->
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<plugin>
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<groupId>org.apache.maven.plugins</groupId>
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291
pom.xml.orig
Normal file
291
pom.xml.orig
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@@ -0,0 +1,291 @@
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<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
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xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
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<modelVersion>4.0.0</modelVersion>
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<!--
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Note: HAPI projects use the "hapi-fhir" POM as their base to provide easy management.
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You do not need to use this in your own projects, so the "parent" tag and it's
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contents below may be removed
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if you are using this file as a basis for your own project.
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-->
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<parent>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir</artifactId>
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<<<<<<< HEAD
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<version>3.7.0</version>
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=======
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<version>3.7.0-SNAPSHOT</version>
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>>>>>>> 18c85900e500863b2b24080da9fe5e11c6d0a434
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</parent>
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<groupId>ca.uhn.hapi.fhir.demo</groupId>
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<artifactId>hapi-fhir-jpaserver-starter</artifactId>
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<packaging>war</packaging>
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<name>HAPI FHIR JPA Server - Starter Project</name>
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<repositories>
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<repository>
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<id>oss-snapshots</id>
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<snapshots>
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<enabled>true</enabled>
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</snapshots>
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<url>https://oss.sonatype.org/content/repositories/snapshots/</url>
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</repository>
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</repositories>
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<dependencies>
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<dependency>
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<groupId>org.eclipse.jetty.websocket</groupId>
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<artifactId>websocket-api</artifactId>
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<version>${jetty_version}</version>
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</dependency>
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<dependency>
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<groupId>org.eclipse.jetty.websocket</groupId>
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<artifactId>websocket-client</artifactId>
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<version>${jetty_version}</version>
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</dependency>
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<dependency>
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<groupId>mysql</groupId>
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<artifactId>mysql-connector-java</artifactId>
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<version>6.0.5</version>
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</dependency>
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<!-- This dependency includes the core HAPI-FHIR classes -->
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<dependency>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir-base</artifactId>
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<version>${project.version}</version>
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</dependency>
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<!-- At least one "structures" JAR must also be included -->
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<dependency>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir-structures-dstu3</artifactId>
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<version>${project.version}</version>
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</dependency>
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<!-- This dependency includes the JPA server itself, which is packaged separately from the rest of HAPI FHIR -->
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<dependency>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir-jpaserver-base</artifactId>
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<version>${project.version}</version>
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</dependency>
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<dependency>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir-jpaserver-elasticsearch</artifactId>
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<version>${project.version}</version>
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</dependency>
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<!-- This dependency is used for the "FHIR Tester" web app overlay -->
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<dependency>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir-testpage-overlay</artifactId>
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<version>${project.version}</version>
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<type>war</type>
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<scope>provided</scope>
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</dependency>
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<dependency>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir-testpage-overlay</artifactId>
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<version>${project.version}</version>
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<classifier>classes</classifier>
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<scope>provided</scope>
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</dependency>
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<!-- HAPI-FHIR uses Logback for logging support. The logback library is included automatically by Maven as a part of the hapi-fhir-base dependency, but you also need to include a logging library. Logback
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is used here, but log4j would also be fine. -->
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<dependency>
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<groupId>ch.qos.logback</groupId>
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<artifactId>logback-classic</artifactId>
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</dependency>
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<!-- Needed for JEE/Servlet support -->
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<dependency>
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<groupId>javax.servlet</groupId>
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<artifactId>javax.servlet-api</artifactId>
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<scope>provided</scope>
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</dependency>
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<!-- If you are using HAPI narrative generation, you will need to include Thymeleaf as well. Otherwise the following can be omitted. -->
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<dependency>
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<groupId>org.thymeleaf</groupId>
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<artifactId>thymeleaf</artifactId>
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</dependency>
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<!-- Used for CORS support -->
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<dependency>
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<groupId>org.ebaysf.web</groupId>
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<artifactId>cors-filter</artifactId>
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<exclusions>
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<exclusion>
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<artifactId>servlet-api</artifactId>
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<groupId>javax.servlet</groupId>
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</exclusion>
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</exclusions>
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</dependency>
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<!-- Spring Web is used to deploy the server to a web container. -->
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<dependency>
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<groupId>org.springframework</groupId>
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<artifactId>spring-web</artifactId>
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</dependency>
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<!-- You may not need this if you are deploying to an application server which provides database connection pools itself. -->
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<dependency>
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<groupId>org.apache.commons</groupId>
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<artifactId>commons-dbcp2</artifactId>
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</dependency>
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<!-- This example uses Derby embedded database. If you are using another database such as Mysql or Oracle, you may omit the following dependencies and replace them with an appropriate database client
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dependency for your database platform. -->
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<dependency>
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<groupId>org.apache.derby</groupId>
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<artifactId>derby</artifactId>
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</dependency>
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<dependency>
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<groupId>org.apache.derby</groupId>
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<artifactId>derbynet</artifactId>
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</dependency>
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<dependency>
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<groupId>org.apache.derby</groupId>
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<artifactId>derbyclient</artifactId>
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</dependency>
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<!-- The following dependencies are only needed for automated unit tests, you do not neccesarily need them to run the example. -->
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<dependency>
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<groupId>org.eclipse.jetty</groupId>
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<artifactId>jetty-servlets</artifactId>
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<scope>test</scope>
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</dependency>
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<dependency>
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<groupId>org.eclipse.jetty</groupId>
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<artifactId>jetty-servlet</artifactId>
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<scope>test</scope>
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</dependency>
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<dependency>
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<groupId>org.eclipse.jetty.websocket</groupId>
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<artifactId>websocket-server</artifactId>
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<scope>test</scope>
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</dependency>
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<dependency>
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<groupId>org.eclipse.jetty</groupId>
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<artifactId>jetty-server</artifactId>
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<scope>test</scope>
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</dependency>
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<dependency>
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<groupId>org.eclipse.jetty</groupId>
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<artifactId>jetty-util</artifactId>
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<scope>test</scope>
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</dependency>
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<dependency>
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<groupId>org.eclipse.jetty</groupId>
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<artifactId>jetty-webapp</artifactId>
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<scope>test</scope>
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</dependency>
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<dependency>
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<groupId>com.helger</groupId>
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<artifactId>ph-schematron</artifactId>
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<exclusions>
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<exclusion>
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<artifactId>Saxon-HE</artifactId>
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<groupId>net.sf.saxon</groupId>
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</exclusion>
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</exclusions>
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</dependency>
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<!--
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For some reason JavaDoc crashed during site generation unless we have this dependency
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-->
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<dependency>
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<groupId>javax.interceptor</groupId>
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<artifactId>javax.interceptor-api</artifactId>
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<scope>provided</scope>
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</dependency>
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</dependencies>
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<build>
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<!-- Tells Maven to name the generated WAR file as hapi-fhir-jpaserver.war -->
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<finalName>hapi-fhir-jpaserver</finalName>
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<!-- The following is not required for the application to build, but allows you to test it by issuing "mvn jetty:run" from the command line. -->
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<pluginManagement>
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<plugins>
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<plugin>
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<groupId>org.eclipse.jetty</groupId>
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<artifactId>jetty-maven-plugin</artifactId>
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<version>9.4.8.v20180619</version>
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<configuration>
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<webApp>
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<contextPath>/hapi-fhir-jpaserver</contextPath>
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<allowDuplicateFragmentNames>true</allowDuplicateFragmentNames>
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</webApp>
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</configuration>
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</plugin>
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</plugins>
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</pluginManagement>
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<plugins>
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<!-- Tell Maven which Java source version you want to use -->
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<plugin>
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<groupId>org.apache.maven.plugins</groupId>
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<artifactId>maven-compiler-plugin</artifactId>
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<configuration>
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<source>1.8</source>
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<target>1.8</target>
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</configuration>
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</plugin>
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<!-- The configuration here tells the WAR plugin to include the FHIR Tester overlay. You can omit it if you are not using that feature. -->
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<plugin>
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<groupId>org.apache.maven.plugins</groupId>
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<artifactId>maven-war-plugin</artifactId>
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<configuration>
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<archive>
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<manifestEntries>
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<Build-Time>${maven.build.timestamp}</Build-Time>
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</manifestEntries>
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</archive>
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<overlays>
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<overlay>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir-testpage-overlay</artifactId>
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</overlay>
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</overlays>
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<webXml>src/main/webapp/WEB-INF/web.xml</webXml>
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</configuration>
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</plugin>
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<!-- This plugin is just a part of the HAPI internal build process, you do not need to incude it in your own projects -->
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<plugin>
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<groupId>org.apache.maven.plugins</groupId>
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<artifactId>maven-deploy-plugin</artifactId>
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<configuration>
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<skip>true</skip>
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</configuration>
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</plugin>
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<!-- This is to run the integration tests -->
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<plugin>
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<groupId>org.apache.maven.plugins</groupId>
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<artifactId>maven-failsafe-plugin</artifactId>
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<configuration>
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<redirectTestOutputToFile>true</redirectTestOutputToFile>
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</configuration>
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<executions>
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<execution>
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<goals>
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<goal>integration-test</goal>
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<goal>verify</goal>
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</goals>
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</execution>
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</executions>
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</plugin>
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</plugins>
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</build>
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</project>
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@@ -8,10 +8,14 @@ import javax.persistence.EntityManagerFactory;
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import javax.sql.DataSource;
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import ca.uhn.fhir.context.ConfigurationException;
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import ca.uhn.fhir.jpa.model.entity.ModelConfig;
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import ca.uhn.fhir.jpa.search.DatabaseBackedPagingProvider;
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import ca.uhn.fhir.jpa.search.LuceneSearchMappingFactory;
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import ca.uhn.fhir.jpa.util.DerbyTenSevenHapiFhirDialect;
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import org.apache.commons.dbcp2.BasicDataSource;
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import org.apache.commons.lang3.time.DateUtils;
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import org.hibernate.jpa.HibernatePersistenceProvider;
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import org.hl7.fhir.instance.model.Subscription;
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import org.springframework.beans.factory.annotation.Autowire;
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import org.springframework.context.annotation.Bean;
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import org.springframework.context.annotation.Configuration;
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@@ -42,9 +46,23 @@ public class FhirServerConfig extends BaseJavaConfigDstu3 {
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retVal.setAllowMultipleDelete(HapiProperties.getAllowMultipleDelete());
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retVal.setAllowExternalReferences(HapiProperties.getAllowExternalReferences());
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retVal.setExpungeEnabled(HapiProperties.getExpungeEnabled());
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// You can enable these if you want to support Subscriptions from your server
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if (false) {
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retVal.addSupportedSubscriptionType(Subscription.SubscriptionChannelType.RESTHOOK);
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}
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if (false) {
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retVal.addSupportedSubscriptionType(Subscription.SubscriptionChannelType.EMAIL);
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}
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return retVal;
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}
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@Bean
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public ModelConfig modelConfig() {
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return new ModelConfig();
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}
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/**
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* We override the paging provider definition so that we can customize
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* the default/max page sizes for search results. You can set these however
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@@ -65,7 +83,7 @@ public class FhirServerConfig extends BaseJavaConfigDstu3 {
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* A URL to a remote database could also be placed here, along with login credentials and other properties supported by BasicDataSource.
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*/
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@Bean(destroyMethod = "close")
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public DataSource dataSource() throws ClassNotFoundException, NoSuchMethodException, IllegalAccessException, InvocationTargetException, InstantiationException {
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public BasicDataSource dataSource() throws ClassNotFoundException, NoSuchMethodException, IllegalAccessException, InvocationTargetException, InstantiationException {
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BasicDataSource retVal = new BasicDataSource();
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Driver driver = (Driver) Class.forName(HapiProperties.getDataSourceDriver()).getConstructor().newInstance();
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retVal.setDriver(driver);
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@@ -13,7 +13,6 @@ import ca.uhn.fhir.jpa.provider.dstu3.TerminologyUploaderProviderDstu3;
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import ca.uhn.fhir.jpa.provider.r4.JpaSystemProviderR4;
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import ca.uhn.fhir.jpa.provider.r4.TerminologyUploaderProviderR4;
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import ca.uhn.fhir.jpa.search.DatabaseBackedPagingProvider;
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//import ca.uhn.fhir.jpa.subscription.resthook.SubscriptionRestHookInterceptor;
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import ca.uhn.fhir.model.dstu2.composite.MetaDt;
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import ca.uhn.fhir.narrative.DefaultThymeleafNarrativeGenerator;
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import ca.uhn.fhir.rest.server.HardcodedServerAddressStrategy;
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@@ -22,6 +21,7 @@ import ca.uhn.fhir.rest.server.RestfulServer;
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import ca.uhn.fhir.rest.server.interceptor.ResponseHighlighterInterceptor;
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import org.hl7.fhir.dstu3.model.Bundle;
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import org.hl7.fhir.dstu3.model.Meta;
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import org.hl7.fhir.instance.model.Subscription;
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import org.slf4j.Logger;
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import org.slf4j.LoggerFactory;
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import org.springframework.web.context.ContextLoaderListener;
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@@ -176,26 +176,12 @@ public class JpaServerDemo extends RestfulServer {
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}
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}
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/*
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* If you want to support subscriptions, you will want to register interceptors for
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* any type of subscriptions you want to support.
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*/
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boolean subscriptionsEnabled = false;
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if (subscriptionsEnabled) { // <-- DISABLED RIGHT NOW
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//SubscriptionRestHookInterceptor restHookInterceptor = myAppCtx.getBean(SubscriptionRestHookInterceptor.class);
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//registerInterceptor(restHookInterceptor);
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// You might alo want to enable other subscription interceptors too
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// eg...
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// myAppCtx.getBean(SubscriptionWebsocketInterceptor.class);
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// myAppCtx.getBean(SubscriptionEmailInterceptor.class);
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// If you want to enable the $trigger-subscription operation to allow
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// manual triggering of a subscription delivery, enable this provider
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if (false) { // <-- DISABLED RIGHT NOW
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SubscriptionTriggeringProvider retriggeringProvider = myAppCtx.getBean(SubscriptionTriggeringProvider.class);
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registerProvider(retriggeringProvider);
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}
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|
||||
}
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||||
|
||||
}
|
||||
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Reference in New Issue
Block a user