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Merged in changes from the rel_5_3_0 Branch.

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This commit is contained in:
Kevin Dougan
2021-02-16 11:57:15 -05:00
parent c28829f21f 9b3a89c8b7
commit c4f9094c64
7 changed files with 248 additions and 61 deletions
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21
src/main/java/ca/uhn/fhir/jpa/starter/BaseJpaRestfulServer.java
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@@ -11,8 +11,8 @@ import ca.uhn.fhir.jpa.api.dao.IFhirSystemDao;
import ca.uhn.fhir.jpa.binstore.BinaryStorageInterceptor;
import ca.uhn.fhir.jpa.bulk.provider.BulkDataExportProvider;
import ca.uhn.fhir.jpa.interceptor.CascadingDeleteInterceptor;
import ca.uhn.fhir.jpa.interceptor.validation.RepositoryValidatingInterceptor;
import ca.uhn.fhir.jpa.packages.IPackageInstallerSvc;
import ca.uhn.fhir.jpa.packages.PackageInstallOutcomeJson;
import ca.uhn.fhir.jpa.packages.PackageInstallationSpec;
import ca.uhn.fhir.jpa.partition.PartitionManagementProvider;
import ca.uhn.fhir.jpa.provider.*;
@@ -98,6 +98,9 @@ public class BaseJpaRestfulServer extends RestfulServer {
@Autowired
ApplicationContext myApplicationContext;
@Autowired(required = false)
IRepositoryValidationInterceptorFactory factory;
// These are set only if the features are enabled
private CqlProviderLoader cqlProviderLoader;
@@ -359,23 +362,19 @@ public class BaseJpaRestfulServer extends RestfulServer {
.setName(guide.getValue().getName())
.setVersion(guide.getValue().getVersion())
.setInstallMode(PackageInstallationSpec.InstallModeEnum.STORE_AND_INSTALL));
}
}
if(factory != null) {
interceptorService.registerInterceptor(factory.buildUsingStoredStructureDefinitions());
}
if (appProperties.getLastn_enabled()) {
daoConfig.setLastNEnabled(true);
}
daoConfig.getModelConfig().setNormalizedQuantitySearchLevel(appProperties.getNormalized_quantity_search_level());
// Repository Validating Interceptor
if (Boolean.TRUE.equals(appProperties.getEnable_repository_validating_interceptor())) {
RepositoryValidationInterceptorFactory repositoryValidationInterceptorFactory = myApplicationContext.getBean(RepositoryValidationInterceptorFactory.class);
RepositoryValidatingInterceptor interceptor = repositoryValidationInterceptorFactory.build();
interceptorService.registerInterceptor(interceptor);
}
}
}

7
src/main/java/ca/uhn/fhir/jpa/starter/FhirServerConfigCommon.java
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@@ -138,13 +138,6 @@ public class FhirServerConfigCommon {
}
@Bean
@Lazy
public RepositoryValidationInterceptorFactory repositoryValidationInterceptorFactory() {
return new RepositoryValidationInterceptorFactory();
}
@Primary
@Bean
public HibernatePropertiesProvider jpaStarterDialectProvider(LocalContainerEntityManagerFactoryBean myEntityManagerFactory) {

9
src/main/java/ca/uhn/fhir/jpa/starter/IRepositoryValidationInterceptorFactory.java Normal file
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@@ -0,0 +1,9 @@
package ca.uhn.fhir.jpa.starter;
import ca.uhn.fhir.jpa.interceptor.validation.RepositoryValidatingInterceptor;
public interface IRepositoryValidationInterceptorFactory {
RepositoryValidatingInterceptor buildUsingStoredStructureDefinitions();
RepositoryValidatingInterceptor build();
}

38
src/main/java/ca/uhn/fhir/jpa/starter/RepositoryValidationInterceptorFactory.java
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@@ -1,38 +0,0 @@
package ca.uhn.fhir.jpa.starter;
import ca.uhn.fhir.context.FhirContext;
import ca.uhn.fhir.jpa.interceptor.validation.IRepositoryValidatingRule;
import ca.uhn.fhir.jpa.interceptor.validation.RepositoryValidatingInterceptor;
import ca.uhn.fhir.jpa.interceptor.validation.RepositoryValidatingRuleBuilder;
import org.springframework.beans.factory.annotation.Autowired;
import org.springframework.context.ApplicationContext;
import java.util.List;
/**
* This class can be customized to enable the {@link ca.uhn.fhir.jpa.interceptor.validation.RepositoryValidatingInterceptor}
* on this server.
*
* The <code>enable_repository_validating_interceptor</code> property must be enabled in <code>application.yaml</code>
* in order to use this class.
*/
public class RepositoryValidationInterceptorFactory {
@Autowired
private ApplicationContext myApplicationContext;
@Autowired
private FhirContext myFhirContext;
public RepositoryValidatingInterceptor build() {
RepositoryValidatingRuleBuilder ruleBuilder = myApplicationContext.getBean(RepositoryValidatingRuleBuilder.class);
// Customize the ruleBuilder here to have the rules you want! We will give a simple example
// of enabling validation for all Patient resources
ruleBuilder.forResourcesOfType("Patient").requireValidationToDeclaredProfiles();
// Do not customize below this line
List<IRepositoryValidatingRule> rules = ruleBuilder.build();
return new RepositoryValidatingInterceptor(myFhirContext, rules);
}
}

74
src/main/java/ca/uhn/fhir/jpa/starter/RepositoryValidationInterceptorFactoryDstu3.java Normal file
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@@ -0,0 +1,74 @@
package ca.uhn.fhir.jpa.starter;
import ca.uhn.fhir.context.FhirContext;
import ca.uhn.fhir.jpa.api.dao.DaoRegistry;
import ca.uhn.fhir.jpa.api.dao.IFhirResourceDao;
import ca.uhn.fhir.jpa.interceptor.validation.IRepositoryValidatingRule;
import ca.uhn.fhir.jpa.interceptor.validation.RepositoryValidatingInterceptor;
import ca.uhn.fhir.jpa.interceptor.validation.RepositoryValidatingRuleBuilder;
import ca.uhn.fhir.jpa.searchparam.SearchParameterMap;
import ca.uhn.fhir.jpa.starter.annotations.OnDSTU3Condition;
import ca.uhn.fhir.rest.api.server.IBundleProvider;
import ca.uhn.fhir.rest.param.TokenParam;
import org.hl7.fhir.dstu3.model.StructureDefinition;
import org.springframework.boot.autoconfigure.condition.ConditionalOnProperty;
import org.springframework.context.annotation.Conditional;
import org.springframework.context.annotation.Configuration;
import java.util.List;
import java.util.Map;
import java.util.stream.Collectors;
/**
* This class can be customized to enable the {@link RepositoryValidatingInterceptor}
* on this server.
* <p>
* The <code>enable_repository_validating_interceptor</code> property must be enabled in <code>application.yaml</code>
* in order to use this class.
*/
@ConditionalOnProperty(prefix = "hapi.fhir", name = "enable_repository_validating_interceptor", havingValue = "true")
@Configuration
@Conditional(OnDSTU3Condition.class)
public class RepositoryValidationInterceptorFactoryDstu3 implements IRepositoryValidationInterceptorFactory {
private final FhirContext fhirContext;
private final RepositoryValidatingRuleBuilder repositoryValidatingRuleBuilder;
private final IFhirResourceDao structureDefinitionResourceProvider;
public RepositoryValidationInterceptorFactoryDstu3(RepositoryValidatingRuleBuilder repositoryValidatingRuleBuilder, DaoRegistry daoRegistry) {
this.repositoryValidatingRuleBuilder = repositoryValidatingRuleBuilder;
this.fhirContext = daoRegistry.getSystemDao().getContext();
structureDefinitionResourceProvider = daoRegistry.getResourceDao("StructureDefinition");
}
public RepositoryValidatingInterceptor buildUsingStoredStructureDefinitions() {
IBundleProvider results = structureDefinitionResourceProvider.search(new SearchParameterMap().add(StructureDefinition.SP_KIND, new TokenParam("resource")));
Map<String, List<StructureDefinition>> structureDefintions = results.getResources(0, results.size())
.stream()
.map(StructureDefinition.class::cast)
.collect(Collectors.groupingBy(StructureDefinition::getType));
structureDefintions.entrySet().forEach(structureDefinitionListEntry ->
{
String[] urls = structureDefinitionListEntry.getValue().stream().map(StructureDefinition::getUrl).toArray(String[]::new);
repositoryValidatingRuleBuilder.forResourcesOfType(structureDefinitionListEntry.getKey()).requireAtLeastOneProfileOf(urls).and().requireValidationToDeclaredProfiles();
});
List<IRepositoryValidatingRule> rules = repositoryValidatingRuleBuilder.build();
return new RepositoryValidatingInterceptor(fhirContext, rules);
}
public RepositoryValidatingInterceptor build() {
// Customize the ruleBuilder here to have the rules you want! We will give a simple example
// of enabling validation for all Patient resources
repositoryValidatingRuleBuilder.forResourcesOfType("Patient").requireAtLeastProfile("http://hl7.org/fhir/us/core/StructureDefinition/us-core-patient").and().requireValidationToDeclaredProfiles();
// Do not customize below this line
List<IRepositoryValidatingRule> rules = repositoryValidatingRuleBuilder.build();
return new RepositoryValidatingInterceptor(fhirContext, rules);
}
}

76
src/main/java/ca/uhn/fhir/jpa/starter/RepositoryValidationInterceptorFactoryR4.java Normal file
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@@ -0,0 +1,76 @@
package ca.uhn.fhir.jpa.starter;
import ca.uhn.fhir.context.FhirContext;
import ca.uhn.fhir.jpa.api.dao.DaoRegistry;
import ca.uhn.fhir.jpa.api.dao.IFhirResourceDao;
import ca.uhn.fhir.jpa.interceptor.validation.IRepositoryValidatingRule;
import ca.uhn.fhir.jpa.interceptor.validation.RepositoryValidatingInterceptor;
import ca.uhn.fhir.jpa.interceptor.validation.RepositoryValidatingRuleBuilder;
import ca.uhn.fhir.jpa.searchparam.SearchParameterMap;
import ca.uhn.fhir.jpa.starter.annotations.OnR4Condition;
import ca.uhn.fhir.rest.api.server.IBundleProvider;
import ca.uhn.fhir.rest.param.TokenParam;
import org.hl7.fhir.r4.model.StructureDefinition;
import org.springframework.boot.autoconfigure.condition.ConditionalOnProperty;
import org.springframework.context.annotation.Conditional;
import org.springframework.context.annotation.Configuration;
import java.util.List;
import java.util.Map;
import java.util.stream.Collectors;
/**
* This class can be customized to enable the {@link ca.uhn.fhir.jpa.interceptor.validation.RepositoryValidatingInterceptor}
* on this server.
* <p>
* The <code>enable_repository_validating_interceptor</code> property must be enabled in <code>application.yaml</code>
* in order to use this class.
*/
@ConditionalOnProperty(prefix = "hapi.fhir", name = "enable_repository_validating_interceptor", havingValue = "true")
@Configuration
@Conditional(OnR4Condition.class)
public class RepositoryValidationInterceptorFactoryR4 implements IRepositoryValidationInterceptorFactory {
private final FhirContext fhirContext;
private final RepositoryValidatingRuleBuilder repositoryValidatingRuleBuilder;
private final IFhirResourceDao structureDefinitionResourceProvider;
public RepositoryValidationInterceptorFactoryR4(RepositoryValidatingRuleBuilder repositoryValidatingRuleBuilder, DaoRegistry daoRegistry) {
this.repositoryValidatingRuleBuilder = repositoryValidatingRuleBuilder;
this.fhirContext = daoRegistry.getSystemDao().getContext();
structureDefinitionResourceProvider = daoRegistry.getResourceDao("StructureDefinition");
}
@Override
public RepositoryValidatingInterceptor buildUsingStoredStructureDefinitions() {
IBundleProvider results = structureDefinitionResourceProvider.search(new SearchParameterMap().add(StructureDefinition.SP_KIND, new TokenParam("resource")));
Map<String, List<StructureDefinition>> structureDefintions = results.getResources(0, results.size())
.stream()
.map(StructureDefinition.class::cast)
.collect(Collectors.groupingBy(StructureDefinition::getType));
structureDefintions.entrySet().forEach(structureDefinitionListEntry ->
{
String[] urls = structureDefinitionListEntry.getValue().stream().map(StructureDefinition::getUrl).toArray(String[]::new);
repositoryValidatingRuleBuilder.forResourcesOfType(structureDefinitionListEntry.getKey()).requireAtLeastOneProfileOf(urls).and().requireValidationToDeclaredProfiles();
});
List<IRepositoryValidatingRule> rules = repositoryValidatingRuleBuilder.build();
return new RepositoryValidatingInterceptor(fhirContext, rules);
}
@Override
public RepositoryValidatingInterceptor build() {
// Customize the ruleBuilder here to have the rules you want! We will give a simple example
// of enabling validation for all Patient resources
repositoryValidatingRuleBuilder.forResourcesOfType("Patient").requireAtLeastProfile("http://hl7.org/fhir/us/core/StructureDefinition/us-core-patient").and().requireValidationToDeclaredProfiles();
// Do not customize below this line
List<IRepositoryValidatingRule> rules = repositoryValidatingRuleBuilder.build();
return new RepositoryValidatingInterceptor(fhirContext, rules);
}
}

74
src/main/java/ca/uhn/fhir/jpa/starter/RepositoryValidationInterceptorFactoryR5.java Normal file
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@@ -0,0 +1,74 @@
package ca.uhn.fhir.jpa.starter;
import ca.uhn.fhir.context.FhirContext;
import ca.uhn.fhir.jpa.api.dao.DaoRegistry;
import ca.uhn.fhir.jpa.api.dao.IFhirResourceDao;
import ca.uhn.fhir.jpa.interceptor.validation.IRepositoryValidatingRule;
import ca.uhn.fhir.jpa.interceptor.validation.RepositoryValidatingInterceptor;
import ca.uhn.fhir.jpa.interceptor.validation.RepositoryValidatingRuleBuilder;
import ca.uhn.fhir.jpa.searchparam.SearchParameterMap;
import ca.uhn.fhir.jpa.starter.annotations.OnR5Condition;
import ca.uhn.fhir.rest.api.server.IBundleProvider;
import ca.uhn.fhir.rest.param.TokenParam;
import org.hl7.fhir.r5.model.StructureDefinition;
import org.springframework.boot.autoconfigure.condition.ConditionalOnProperty;
import org.springframework.context.annotation.Conditional;
import org.springframework.context.annotation.Configuration;
import java.util.List;
import java.util.Map;
import java.util.stream.Collectors;
/**
* This class can be customized to enable the {@link RepositoryValidatingInterceptor}
* on this server.
* <p>
* The <code>enable_repository_validating_interceptor</code> property must be enabled in <code>application.yaml</code>
* in order to use this class.
*/
@ConditionalOnProperty(prefix = "hapi.fhir", name = "enable_repository_validating_interceptor", havingValue = "true")
@Configuration
@Conditional(OnR5Condition.class)
public class RepositoryValidationInterceptorFactoryR5 implements IRepositoryValidationInterceptorFactory {
private final FhirContext fhirContext;
private final RepositoryValidatingRuleBuilder repositoryValidatingRuleBuilder;
private final IFhirResourceDao structureDefinitionResourceProvider;
public RepositoryValidationInterceptorFactoryR5(RepositoryValidatingRuleBuilder repositoryValidatingRuleBuilder, DaoRegistry daoRegistry) {
this.repositoryValidatingRuleBuilder = repositoryValidatingRuleBuilder;
this.fhirContext = daoRegistry.getSystemDao().getContext();
structureDefinitionResourceProvider = daoRegistry.getResourceDao("StructureDefinition");
}
public RepositoryValidatingInterceptor buildUsingStoredStructureDefinitions() {
IBundleProvider results = structureDefinitionResourceProvider.search(new SearchParameterMap().add(StructureDefinition.SP_KIND, new TokenParam("resource")));
Map<String, List<StructureDefinition>> structureDefintions = results.getResources(0, results.size())
.stream()
.map(StructureDefinition.class::cast)
.collect(Collectors.groupingBy(StructureDefinition::getType));
structureDefintions.entrySet().forEach(structureDefinitionListEntry ->
{
String[] urls = structureDefinitionListEntry.getValue().stream().map(StructureDefinition::getUrl).toArray(String[]::new);
repositoryValidatingRuleBuilder.forResourcesOfType(structureDefinitionListEntry.getKey()).requireAtLeastOneProfileOf(urls).and().requireValidationToDeclaredProfiles();
});
List<IRepositoryValidatingRule> rules = repositoryValidatingRuleBuilder.build();
return new RepositoryValidatingInterceptor(fhirContext, rules);
}
public RepositoryValidatingInterceptor build() {
// Customize the ruleBuilder here to have the rules you want! We will give a simple example
// of enabling validation for all Patient resources
repositoryValidatingRuleBuilder.forResourcesOfType("Patient").requireAtLeastProfile("http://hl7.org/fhir/us/core/StructureDefinition/us-core-patient").and().requireValidationToDeclaredProfiles();
// Do not customize below this line
List<IRepositoryValidatingRule> rules = repositoryValidatingRuleBuilder.build();
return new RepositoryValidatingInterceptor(fhirContext, rules);
}
}