Merge pull request #51 from hapifhir/allowedBundleTypes
Allowed bundle types
This commit is contained in:
Patrick Werner
GitHub
5
.editorconfig
Normal file
5
.editorconfig
Normal file
@@ -0,0 +1,5 @@
|
||||
[*.java]
|
||||
charset = utf-8
|
||||
indent_style = space
|
||||
indent_size = 2
|
||||
|
||||
138
.gitignore
vendored
138
.gitignore
vendored
@@ -1,7 +1,6 @@
|
||||
target/
|
||||
.idea/
|
||||
*.iml
|
||||
*.orig
|
||||
target/
|
||||
*.iml
|
||||
|
||||
# Compiled class file
|
||||
*.class
|
||||
@@ -26,3 +25,136 @@ target/
|
||||
|
||||
# virtual machine crash logs, see http://www.java.com/en/download/help/error_hotspot.xml
|
||||
hs_err_pid*
|
||||
### Windows template
|
||||
# Windows thumbnail cache files
|
||||
Thumbs.db
|
||||
Thumbs.db:encryptable
|
||||
ehthumbs.db
|
||||
ehthumbs_vista.db
|
||||
|
||||
# Dump file
|
||||
*.stackdump
|
||||
|
||||
# Folder config file
|
||||
[Dd]esktop.ini
|
||||
|
||||
# Recycle Bin used on file shares
|
||||
$RECYCLE.BIN/
|
||||
|
||||
# Windows Installer files
|
||||
*.cab
|
||||
*.msi
|
||||
*.msix
|
||||
*.msm
|
||||
*.msp
|
||||
|
||||
# Windows shortcuts
|
||||
*.lnk
|
||||
|
||||
### JetBrains template
|
||||
# Covers JetBrains IDEs: IntelliJ, RubyMine, PhpStorm, AppCode, PyCharm, CLion, Android Studio and WebStorm
|
||||
# Reference: https://intellij-support.jetbrains.com/hc/en-us/articles/206544839
|
||||
.idea/
|
||||
|
||||
# CMake
|
||||
cmake-build-*/
|
||||
|
||||
# File-based project format
|
||||
*.iws
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||||
|
||||
# IntelliJ
|
||||
out/
|
||||
|
||||
# JIRA plugin
|
||||
atlassian-ide-plugin.xml
|
||||
|
||||
# Crashlytics plugin (for Android Studio and IntelliJ)
|
||||
com_crashlytics_export_strings.xml
|
||||
crashlytics.properties
|
||||
crashlytics-build.properties
|
||||
fabric.properties
|
||||
|
||||
### Eclipse template
|
||||
.metadata
|
||||
bin/
|
||||
tmp/
|
||||
*.tmp
|
||||
*.bak
|
||||
*.swp
|
||||
*~.nib
|
||||
local.properties
|
||||
.settings/
|
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.loadpath
|
||||
.recommenders
|
||||
|
||||
# External tool builders
|
||||
.externalToolBuilders/
|
||||
|
||||
# Locally stored "Eclipse launch configurations"
|
||||
*.launch
|
||||
|
||||
# PyDev specific (Python IDE for Eclipse)
|
||||
*.pydevproject
|
||||
|
||||
# CDT-specific (C/C++ Development Tooling)
|
||||
.cproject
|
||||
|
||||
# CDT- autotools
|
||||
.autotools
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||||
|
||||
# Java annotation processor (APT)
|
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.factorypath
|
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|
||||
# PDT-specific (PHP Development Tools)
|
||||
.buildpath
|
||||
|
||||
# sbteclipse plugin
|
||||
.target
|
||||
|
||||
# Tern plugin
|
||||
.tern-project
|
||||
|
||||
# TeXlipse plugin
|
||||
.texlipse
|
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|
||||
# STS (Spring Tool Suite)
|
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.springBeans
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|
||||
# Code Recommenders
|
||||
.recommenders/
|
||||
|
||||
# Annotation Processing
|
||||
.apt_generated/
|
||||
|
||||
# Scala IDE specific (Scala & Java development for Eclipse)
|
||||
.cache-main
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.scala_dependencies
|
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.worksheet
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|
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### macOS template
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# General
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.DS_Store
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.AppleDouble
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.LSOverride
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|
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# Icon must end with two \r
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Icon
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|
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# Thumbnails
|
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._*
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|
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# Files that might appear in the root of a volume
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.DocumentRevisions-V100
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.fseventsd
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.Spotlight-V100
|
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.TemporaryItems
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.Trashes
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.VolumeIcon.icns
|
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.com.apple.timemachine.donotpresent
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|
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# Directories potentially created on remote AFP share
|
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.AppleDB
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.AppleDesktop
|
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Network Trash Folder
|
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Temporary Items
|
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.apdisk
|
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@@ -45,6 +45,7 @@ public class HapiProperties {
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static final String SUBSCRIPTION_EMAIL_ENABLED = "subscription.email.enabled";
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static final String SUBSCRIPTION_RESTHOOK_ENABLED = "subscription.resthook.enabled";
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static final String SUBSCRIPTION_WEBSOCKET_ENABLED = "subscription.websocket.enabled";
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static final String ALLOWED_BUNDLE_TYPES = "allowed_bundle_types";
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static final String TEST_PORT = "test.port";
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static final String TESTER_CONFIG_REFUSE_TO_FETCH_THIRD_PARTY_URLS = "tester.config.refuse_to_fetch_third_party_urls";
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static final String CORS_ENABLED = "cors.enabled";
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@@ -286,6 +287,10 @@ public class HapiProperties {
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return HapiProperties.getProperty(CORS_ALLOWED_ORIGIN, "*");
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}
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public static String getAllowedBundleTypes() {
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return HapiProperties.getProperty(ALLOWED_BUNDLE_TYPES, "");
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}
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public static Set<String> getSupportedResourceTypes() {
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String[] types = defaultString(getProperty("supported_resource_types")).split(",");
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return Arrays.stream(types)
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@@ -27,7 +27,10 @@ import ca.uhn.fhir.rest.server.RestfulServer;
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import ca.uhn.fhir.rest.server.interceptor.*;
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import ca.uhn.fhir.validation.IValidatorModule;
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import ca.uhn.fhir.validation.ResultSeverityEnum;
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import java.util.HashSet;
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import java.util.TreeSet;
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import org.hl7.fhir.dstu3.model.Bundle;
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import org.hl7.fhir.r4.model.Bundle.BundleType;
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import org.hl7.fhir.dstu3.model.Meta;
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import org.springframework.context.ApplicationContext;
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import org.springframework.http.HttpHeaders;
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@@ -40,258 +43,281 @@ import java.util.Set;
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public class JpaRestfulServer extends RestfulServer {
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private static final long serialVersionUID = 1L;
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private static final long serialVersionUID = 1L;
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@SuppressWarnings("unchecked")
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@Override
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protected void initialize() throws ServletException {
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super.initialize();
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/*
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* Create a FhirContext object that uses the version of FHIR
|
||||
* specified in the properties file.
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*/
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ApplicationContext appCtx = (ApplicationContext) getServletContext().getAttribute("org.springframework.web.context.WebApplicationContext.ROOT");
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// Customize supported resource types
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Set<String> supportedResourceTypes = HapiProperties.getSupportedResourceTypes();
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if (!supportedResourceTypes.isEmpty()) {
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DaoRegistry daoRegistry = appCtx.getBean(DaoRegistry.class);
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daoRegistry.setSupportedResourceTypes(supportedResourceTypes);
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}
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/*
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* ResourceProviders are fetched from the Spring context
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*/
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FhirVersionEnum fhirVersion = HapiProperties.getFhirVersion();
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ResourceProviderFactory resourceProviders;
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Object systemProvider;
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if (fhirVersion == FhirVersionEnum.DSTU2) {
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resourceProviders = appCtx.getBean("myResourceProvidersDstu2", ResourceProviderFactory.class);
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systemProvider = appCtx.getBean("mySystemProviderDstu2", JpaSystemProviderDstu2.class);
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} else if (fhirVersion == FhirVersionEnum.DSTU3) {
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resourceProviders = appCtx.getBean("myResourceProvidersDstu3", ResourceProviderFactory.class);
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systemProvider = appCtx.getBean("mySystemProviderDstu3", JpaSystemProviderDstu3.class);
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} else if (fhirVersion == FhirVersionEnum.R4) {
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resourceProviders = appCtx.getBean("myResourceProvidersR4", ResourceProviderFactory.class);
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systemProvider = appCtx.getBean("mySystemProviderR4", JpaSystemProviderR4.class);
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} else if (fhirVersion == FhirVersionEnum.R5) {
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resourceProviders = appCtx.getBean("myResourceProvidersR5", ResourceProviderFactory.class);
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systemProvider = appCtx.getBean("mySystemProviderR5", JpaSystemProviderR5.class);
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} else {
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throw new IllegalStateException();
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}
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setFhirContext(appCtx.getBean(FhirContext.class));
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registerProviders(resourceProviders.createProviders());
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registerProvider(systemProvider);
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/*
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* The conformance provider exports the supported resources, search parameters, etc for
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* this server. The JPA version adds resourceProviders counts to the exported statement, so it
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* is a nice addition.
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*
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* You can also create your own subclass of the conformance provider if you need to
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* provide further customization of your server's CapabilityStatement
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*/
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if (fhirVersion == FhirVersionEnum.DSTU2) {
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IFhirSystemDao<ca.uhn.fhir.model.dstu2.resource.Bundle, MetaDt> systemDao = appCtx.getBean("mySystemDaoDstu2", IFhirSystemDao.class);
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JpaConformanceProviderDstu2 confProvider = new JpaConformanceProviderDstu2(this, systemDao, appCtx.getBean(DaoConfig.class));
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confProvider.setImplementationDescription("HAPI FHIR DSTU2 Server");
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setServerConformanceProvider(confProvider);
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} else if (fhirVersion == FhirVersionEnum.DSTU3) {
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IFhirSystemDao<Bundle, Meta> systemDao = appCtx.getBean("mySystemDaoDstu3", IFhirSystemDao.class);
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JpaConformanceProviderDstu3 confProvider = new JpaConformanceProviderDstu3(this, systemDao, appCtx.getBean(DaoConfig.class));
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confProvider.setImplementationDescription("HAPI FHIR DSTU3 Server");
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setServerConformanceProvider(confProvider);
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} else if (fhirVersion == FhirVersionEnum.R4) {
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IFhirSystemDao<org.hl7.fhir.r4.model.Bundle, org.hl7.fhir.r4.model.Meta> systemDao = appCtx.getBean("mySystemDaoR4", IFhirSystemDao.class);
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JpaConformanceProviderR4 confProvider = new JpaConformanceProviderR4(this, systemDao, appCtx.getBean(DaoConfig.class));
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confProvider.setImplementationDescription("HAPI FHIR R4 Server");
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setServerConformanceProvider(confProvider);
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} else if (fhirVersion == FhirVersionEnum.R5) {
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IFhirSystemDao<org.hl7.fhir.r5.model.Bundle, org.hl7.fhir.r5.model.Meta> systemDao = appCtx.getBean("mySystemDaoR5", IFhirSystemDao.class);
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JpaConformanceProviderR5 confProvider = new JpaConformanceProviderR5(this, systemDao, appCtx.getBean(DaoConfig.class));
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confProvider.setImplementationDescription("HAPI FHIR R5 Server");
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setServerConformanceProvider(confProvider);
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} else {
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throw new IllegalStateException();
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}
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/*
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* ETag Support
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*/
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setETagSupport(HapiProperties.getEtagSupport());
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|
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/*
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* This server tries to dynamically generate narratives
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*/
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FhirContext ctx = getFhirContext();
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ctx.setNarrativeGenerator(new DefaultThymeleafNarrativeGenerator());
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/*
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* Default to JSON and pretty printing
|
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*/
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setDefaultPrettyPrint(HapiProperties.getDefaultPrettyPrint());
|
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/*
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* Default encoding
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*/
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setDefaultResponseEncoding(HapiProperties.getDefaultEncoding());
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/*
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* This configures the server to page search results to and from
|
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* the database, instead of only paging them to memory. This may mean
|
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* a performance hit when performing searches that return lots of results,
|
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* but makes the server much more scalable.
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*/
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setPagingProvider(appCtx.getBean(DatabaseBackedPagingProvider.class));
|
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|
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/*
|
||||
* This interceptor formats the output using nice colourful
|
||||
* HTML output when the request is detected to come from a
|
||||
* browser.
|
||||
*/
|
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ResponseHighlighterInterceptor responseHighlighterInterceptor = new ResponseHighlighterInterceptor();
|
||||
;
|
||||
this.registerInterceptor(responseHighlighterInterceptor);
|
||||
|
||||
/*
|
||||
* Add some logging for each request
|
||||
*/
|
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LoggingInterceptor loggingInterceptor = new LoggingInterceptor();
|
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loggingInterceptor.setLoggerName(HapiProperties.getLoggerName());
|
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loggingInterceptor.setMessageFormat(HapiProperties.getLoggerFormat());
|
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loggingInterceptor.setErrorMessageFormat(HapiProperties.getLoggerErrorFormat());
|
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loggingInterceptor.setLogExceptions(HapiProperties.getLoggerLogExceptions());
|
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this.registerInterceptor(loggingInterceptor);
|
||||
|
||||
/*
|
||||
* If you are hosting this server at a specific DNS name, the server will try to
|
||||
* figure out the FHIR base URL based on what the web container tells it, but
|
||||
* this doesn't always work. If you are setting links in your search bundles that
|
||||
* just refer to "localhost", you might want to use a server address strategy:
|
||||
*/
|
||||
String serverAddress = HapiProperties.getServerAddress();
|
||||
if (serverAddress != null && serverAddress.length() > 0) {
|
||||
setServerAddressStrategy(new HardcodedServerAddressStrategy(serverAddress));
|
||||
}
|
||||
|
||||
/*
|
||||
* If you are using DSTU3+, you may want to add a terminology uploader, which allows
|
||||
* uploading of external terminologies such as Snomed CT. Note that this uploader
|
||||
* does not have any security attached (any anonymous user may use it by default)
|
||||
* so it is a potential security vulnerability. Consider using an AuthorizationInterceptor
|
||||
* with this feature.
|
||||
*/
|
||||
if (false) { // <-- DISABLED RIGHT NOW
|
||||
registerProvider(appCtx.getBean(TerminologyUploaderProvider.class));
|
||||
}
|
||||
|
||||
// If you want to enable the $trigger-subscription operation to allow
|
||||
// manual triggering of a subscription delivery, enable this provider
|
||||
if (false) { // <-- DISABLED RIGHT NOW
|
||||
SubscriptionTriggeringProvider retriggeringProvider = appCtx.getBean(SubscriptionTriggeringProvider.class);
|
||||
registerProvider(retriggeringProvider);
|
||||
}
|
||||
|
||||
// Define your CORS configuration. This is an example
|
||||
// showing a typical setup. You should customize this
|
||||
// to your specific needs
|
||||
if (HapiProperties.getCorsEnabled()) {
|
||||
CorsConfiguration config = new CorsConfiguration();
|
||||
config.addAllowedHeader(HttpHeaders.ORIGIN);
|
||||
config.addAllowedHeader(HttpHeaders.ACCEPT);
|
||||
config.addAllowedHeader(HttpHeaders.CONTENT_TYPE);
|
||||
config.addAllowedHeader(HttpHeaders.AUTHORIZATION);
|
||||
config.addAllowedHeader(HttpHeaders.CACHE_CONTROL);
|
||||
config.addAllowedHeader("x-fhir-starter");
|
||||
config.addAllowedHeader("X-Requested-With");
|
||||
config.addAllowedHeader("Prefer");
|
||||
String allAllowedCORSOrigins = HapiProperties.getCorsAllowedOrigin();
|
||||
Arrays.stream(allAllowedCORSOrigins.split(",")).forEach(o -> {
|
||||
config.addAllowedOrigin(o);
|
||||
});
|
||||
config.addAllowedOrigin(HapiProperties.getCorsAllowedOrigin());
|
||||
|
||||
config.addExposedHeader("Location");
|
||||
config.addExposedHeader("Content-Location");
|
||||
config.setAllowedMethods(
|
||||
Arrays.asList("GET", "POST", "PUT", "DELETE", "OPTIONS", "PATCH", "HEAD"));
|
||||
config.setAllowCredentials(HapiProperties.getCorsAllowedCredentials());
|
||||
|
||||
// Create the interceptor and register it
|
||||
CorsInterceptor interceptor = new CorsInterceptor(config);
|
||||
registerInterceptor(interceptor);
|
||||
}
|
||||
|
||||
// If subscriptions are enabled, we want to register the interceptor that
|
||||
// will activate them and match results against them
|
||||
if (HapiProperties.getSubscriptionWebsocketEnabled() ||
|
||||
HapiProperties.getSubscriptionEmailEnabled() ||
|
||||
HapiProperties.getSubscriptionRestHookEnabled()) {
|
||||
// Loads subscription interceptors (SubscriptionActivatingInterceptor, SubscriptionMatcherInterceptor)
|
||||
// with activation of scheduled subscription
|
||||
SubscriptionInterceptorLoader subscriptionInterceptorLoader = appCtx.getBean(SubscriptionInterceptorLoader.class);
|
||||
subscriptionInterceptorLoader.registerInterceptors();
|
||||
|
||||
// Subscription debug logging
|
||||
IInterceptorService interceptorService = appCtx.getBean(IInterceptorService.class);
|
||||
interceptorService.registerInterceptor(new SubscriptionDebugLogInterceptor());
|
||||
}
|
||||
|
||||
// Cascading deletes
|
||||
DaoRegistry daoRegistry = appCtx.getBean(DaoRegistry.class);
|
||||
IInterceptorBroadcaster interceptorBroadcaster = appCtx.getBean(IInterceptorBroadcaster.class);
|
||||
if (HapiProperties.getAllowCascadingDeletes()) {
|
||||
CascadingDeleteInterceptor cascadingDeleteInterceptor = new CascadingDeleteInterceptor(daoRegistry, interceptorBroadcaster);
|
||||
getInterceptorService().registerInterceptor(cascadingDeleteInterceptor);
|
||||
}
|
||||
|
||||
// Binary Storage
|
||||
if (HapiProperties.isBinaryStorageEnabled()) {
|
||||
BinaryStorageInterceptor binaryStorageInterceptor = appCtx.getBean(BinaryStorageInterceptor.class);
|
||||
getInterceptorService().registerInterceptor(binaryStorageInterceptor);
|
||||
}
|
||||
|
||||
// Validation
|
||||
IValidatorModule validatorModule;
|
||||
switch (fhirVersion) {
|
||||
case DSTU3:
|
||||
validatorModule = appCtx.getBean("myInstanceValidatorDstu3", IValidatorModule.class);
|
||||
break;
|
||||
case R4:
|
||||
validatorModule = appCtx.getBean("myInstanceValidatorR4", IValidatorModule.class);
|
||||
break;
|
||||
case R5:
|
||||
validatorModule = appCtx.getBean("myInstanceValidatorR5", IValidatorModule.class);
|
||||
break;
|
||||
default:
|
||||
validatorModule = null;
|
||||
break;
|
||||
}
|
||||
if (validatorModule != null) {
|
||||
if (HapiProperties.getValidateRequestsEnabled()) {
|
||||
RequestValidatingInterceptor interceptor = new RequestValidatingInterceptor();
|
||||
interceptor.setFailOnSeverity(ResultSeverityEnum.ERROR);
|
||||
interceptor.setValidatorModules(Collections.singletonList(validatorModule));
|
||||
registerInterceptor(interceptor);
|
||||
}
|
||||
if (HapiProperties.getValidateResponsesEnabled()) {
|
||||
ResponseValidatingInterceptor interceptor = new ResponseValidatingInterceptor();
|
||||
interceptor.setFailOnSeverity(ResultSeverityEnum.ERROR);
|
||||
interceptor.setValidatorModules(Collections.singletonList(validatorModule));
|
||||
registerInterceptor(interceptor);
|
||||
}
|
||||
}
|
||||
|
||||
// GraphQL
|
||||
if (HapiProperties.getGraphqlEnabled()) {
|
||||
if (fhirVersion.isEqualOrNewerThan(FhirVersionEnum.DSTU3)) {
|
||||
registerProvider(appCtx.getBean(GraphQLProvider.class));
|
||||
}
|
||||
}
|
||||
@SuppressWarnings("unchecked")
|
||||
@Override
|
||||
protected void initialize() throws ServletException {
|
||||
super.initialize();
|
||||
|
||||
/*
|
||||
* Create a FhirContext object that uses the version of FHIR
|
||||
* specified in the properties file.
|
||||
*/
|
||||
ApplicationContext appCtx = (ApplicationContext) getServletContext()
|
||||
.getAttribute("org.springframework.web.context.WebApplicationContext.ROOT");
|
||||
// Customize supported resource types
|
||||
Set<String> supportedResourceTypes = HapiProperties.getSupportedResourceTypes();
|
||||
if (!supportedResourceTypes.isEmpty()) {
|
||||
DaoRegistry daoRegistry = appCtx.getBean(DaoRegistry.class);
|
||||
daoRegistry.setSupportedResourceTypes(supportedResourceTypes);
|
||||
}
|
||||
|
||||
/*
|
||||
* ResourceProviders are fetched from the Spring context
|
||||
*/
|
||||
FhirVersionEnum fhirVersion = HapiProperties.getFhirVersion();
|
||||
ResourceProviderFactory resourceProviders;
|
||||
Object systemProvider;
|
||||
if (fhirVersion == FhirVersionEnum.DSTU2) {
|
||||
resourceProviders = appCtx.getBean("myResourceProvidersDstu2", ResourceProviderFactory.class);
|
||||
systemProvider = appCtx.getBean("mySystemProviderDstu2", JpaSystemProviderDstu2.class);
|
||||
} else if (fhirVersion == FhirVersionEnum.DSTU3) {
|
||||
resourceProviders = appCtx.getBean("myResourceProvidersDstu3", ResourceProviderFactory.class);
|
||||
systemProvider = appCtx.getBean("mySystemProviderDstu3", JpaSystemProviderDstu3.class);
|
||||
} else if (fhirVersion == FhirVersionEnum.R4) {
|
||||
resourceProviders = appCtx.getBean("myResourceProvidersR4", ResourceProviderFactory.class);
|
||||
systemProvider = appCtx.getBean("mySystemProviderR4", JpaSystemProviderR4.class);
|
||||
} else if (fhirVersion == FhirVersionEnum.R5) {
|
||||
resourceProviders = appCtx.getBean("myResourceProvidersR5", ResourceProviderFactory.class);
|
||||
systemProvider = appCtx.getBean("mySystemProviderR5", JpaSystemProviderR5.class);
|
||||
} else {
|
||||
throw new IllegalStateException();
|
||||
}
|
||||
|
||||
setFhirContext(appCtx.getBean(FhirContext.class));
|
||||
|
||||
registerProviders(resourceProviders.createProviders());
|
||||
registerProvider(systemProvider);
|
||||
|
||||
/*
|
||||
* The conformance provider exports the supported resources, search parameters, etc for
|
||||
* this server. The JPA version adds resourceProviders counts to the exported statement, so it
|
||||
* is a nice addition.
|
||||
*
|
||||
* You can also create your own subclass of the conformance provider if you need to
|
||||
* provide further customization of your server's CapabilityStatement
|
||||
*/
|
||||
if (fhirVersion == FhirVersionEnum.DSTU2) {
|
||||
IFhirSystemDao<ca.uhn.fhir.model.dstu2.resource.Bundle, MetaDt> systemDao = appCtx
|
||||
.getBean("mySystemDaoDstu2", IFhirSystemDao.class);
|
||||
JpaConformanceProviderDstu2 confProvider = new JpaConformanceProviderDstu2(this, systemDao,
|
||||
appCtx.getBean(DaoConfig.class));
|
||||
confProvider.setImplementationDescription("HAPI FHIR DSTU2 Server");
|
||||
setServerConformanceProvider(confProvider);
|
||||
} else if (fhirVersion == FhirVersionEnum.DSTU3) {
|
||||
IFhirSystemDao<Bundle, Meta> systemDao = appCtx
|
||||
.getBean("mySystemDaoDstu3", IFhirSystemDao.class);
|
||||
JpaConformanceProviderDstu3 confProvider = new JpaConformanceProviderDstu3(this, systemDao,
|
||||
appCtx.getBean(DaoConfig.class));
|
||||
confProvider.setImplementationDescription("HAPI FHIR DSTU3 Server");
|
||||
setServerConformanceProvider(confProvider);
|
||||
} else if (fhirVersion == FhirVersionEnum.R4) {
|
||||
IFhirSystemDao<org.hl7.fhir.r4.model.Bundle, org.hl7.fhir.r4.model.Meta> systemDao = appCtx
|
||||
.getBean("mySystemDaoR4", IFhirSystemDao.class);
|
||||
JpaConformanceProviderR4 confProvider = new JpaConformanceProviderR4(this, systemDao,
|
||||
appCtx.getBean(DaoConfig.class));
|
||||
confProvider.setImplementationDescription("HAPI FHIR R4 Server");
|
||||
setServerConformanceProvider(confProvider);
|
||||
} else if (fhirVersion == FhirVersionEnum.R5) {
|
||||
IFhirSystemDao<org.hl7.fhir.r5.model.Bundle, org.hl7.fhir.r5.model.Meta> systemDao = appCtx
|
||||
.getBean("mySystemDaoR5", IFhirSystemDao.class);
|
||||
JpaConformanceProviderR5 confProvider = new JpaConformanceProviderR5(this, systemDao,
|
||||
appCtx.getBean(DaoConfig.class));
|
||||
confProvider.setImplementationDescription("HAPI FHIR R5 Server");
|
||||
setServerConformanceProvider(confProvider);
|
||||
} else {
|
||||
throw new IllegalStateException();
|
||||
}
|
||||
|
||||
/*
|
||||
* ETag Support
|
||||
*/
|
||||
setETagSupport(HapiProperties.getEtagSupport());
|
||||
|
||||
/*
|
||||
* This server tries to dynamically generate narratives
|
||||
*/
|
||||
FhirContext ctx = getFhirContext();
|
||||
ctx.setNarrativeGenerator(new DefaultThymeleafNarrativeGenerator());
|
||||
|
||||
/*
|
||||
* Default to JSON and pretty printing
|
||||
*/
|
||||
setDefaultPrettyPrint(HapiProperties.getDefaultPrettyPrint());
|
||||
|
||||
/*
|
||||
* Default encoding
|
||||
*/
|
||||
setDefaultResponseEncoding(HapiProperties.getDefaultEncoding());
|
||||
|
||||
/*
|
||||
* This configures the server to page search results to and from
|
||||
* the database, instead of only paging them to memory. This may mean
|
||||
* a performance hit when performing searches that return lots of results,
|
||||
* but makes the server much more scalable.
|
||||
*/
|
||||
setPagingProvider(appCtx.getBean(DatabaseBackedPagingProvider.class));
|
||||
|
||||
/*
|
||||
* This interceptor formats the output using nice colourful
|
||||
* HTML output when the request is detected to come from a
|
||||
* browser.
|
||||
*/
|
||||
ResponseHighlighterInterceptor responseHighlighterInterceptor = new ResponseHighlighterInterceptor();
|
||||
;
|
||||
this.registerInterceptor(responseHighlighterInterceptor);
|
||||
|
||||
/*
|
||||
* Add some logging for each request
|
||||
*/
|
||||
LoggingInterceptor loggingInterceptor = new LoggingInterceptor();
|
||||
loggingInterceptor.setLoggerName(HapiProperties.getLoggerName());
|
||||
loggingInterceptor.setMessageFormat(HapiProperties.getLoggerFormat());
|
||||
loggingInterceptor.setErrorMessageFormat(HapiProperties.getLoggerErrorFormat());
|
||||
loggingInterceptor.setLogExceptions(HapiProperties.getLoggerLogExceptions());
|
||||
this.registerInterceptor(loggingInterceptor);
|
||||
|
||||
/*
|
||||
* If you are hosting this server at a specific DNS name, the server will try to
|
||||
* figure out the FHIR base URL based on what the web container tells it, but
|
||||
* this doesn't always work. If you are setting links in your search bundles that
|
||||
* just refer to "localhost", you might want to use a server address strategy:
|
||||
*/
|
||||
String serverAddress = HapiProperties.getServerAddress();
|
||||
if (serverAddress != null && serverAddress.length() > 0) {
|
||||
setServerAddressStrategy(new HardcodedServerAddressStrategy(serverAddress));
|
||||
}
|
||||
|
||||
/*
|
||||
* If you are using DSTU3+, you may want to add a terminology uploader, which allows
|
||||
* uploading of external terminologies such as Snomed CT. Note that this uploader
|
||||
* does not have any security attached (any anonymous user may use it by default)
|
||||
* so it is a potential security vulnerability. Consider using an AuthorizationInterceptor
|
||||
* with this feature.
|
||||
*/
|
||||
if (false) { // <-- DISABLED RIGHT NOW
|
||||
registerProvider(appCtx.getBean(TerminologyUploaderProvider.class));
|
||||
}
|
||||
|
||||
// If you want to enable the $trigger-subscription operation to allow
|
||||
// manual triggering of a subscription delivery, enable this provider
|
||||
if (false) { // <-- DISABLED RIGHT NOW
|
||||
SubscriptionTriggeringProvider retriggeringProvider = appCtx
|
||||
.getBean(SubscriptionTriggeringProvider.class);
|
||||
registerProvider(retriggeringProvider);
|
||||
}
|
||||
|
||||
// Define your CORS configuration. This is an example
|
||||
// showing a typical setup. You should customize this
|
||||
// to your specific needs
|
||||
if (HapiProperties.getCorsEnabled()) {
|
||||
CorsConfiguration config = new CorsConfiguration();
|
||||
config.addAllowedHeader(HttpHeaders.ORIGIN);
|
||||
config.addAllowedHeader(HttpHeaders.ACCEPT);
|
||||
config.addAllowedHeader(HttpHeaders.CONTENT_TYPE);
|
||||
config.addAllowedHeader(HttpHeaders.AUTHORIZATION);
|
||||
config.addAllowedHeader(HttpHeaders.CACHE_CONTROL);
|
||||
config.addAllowedHeader("x-fhir-starter");
|
||||
config.addAllowedHeader("X-Requested-With");
|
||||
config.addAllowedHeader("Prefer");
|
||||
String allAllowedCORSOrigins = HapiProperties.getCorsAllowedOrigin();
|
||||
Arrays.stream(allAllowedCORSOrigins.split(",")).forEach(o -> {
|
||||
config.addAllowedOrigin(o);
|
||||
});
|
||||
config.addAllowedOrigin(HapiProperties.getCorsAllowedOrigin());
|
||||
|
||||
config.addExposedHeader("Location");
|
||||
config.addExposedHeader("Content-Location");
|
||||
config.setAllowedMethods(
|
||||
Arrays.asList("GET", "POST", "PUT", "DELETE", "OPTIONS", "PATCH", "HEAD"));
|
||||
config.setAllowCredentials(HapiProperties.getCorsAllowedCredentials());
|
||||
|
||||
// Create the interceptor and register it
|
||||
CorsInterceptor interceptor = new CorsInterceptor(config);
|
||||
registerInterceptor(interceptor);
|
||||
}
|
||||
|
||||
// If subscriptions are enabled, we want to register the interceptor that
|
||||
// will activate them and match results against them
|
||||
if (HapiProperties.getSubscriptionWebsocketEnabled() ||
|
||||
HapiProperties.getSubscriptionEmailEnabled() ||
|
||||
HapiProperties.getSubscriptionRestHookEnabled()) {
|
||||
// Loads subscription interceptors (SubscriptionActivatingInterceptor, SubscriptionMatcherInterceptor)
|
||||
// with activation of scheduled subscription
|
||||
SubscriptionInterceptorLoader subscriptionInterceptorLoader = appCtx
|
||||
.getBean(SubscriptionInterceptorLoader.class);
|
||||
subscriptionInterceptorLoader.registerInterceptors();
|
||||
|
||||
// Subscription debug logging
|
||||
IInterceptorService interceptorService = appCtx.getBean(IInterceptorService.class);
|
||||
interceptorService.registerInterceptor(new SubscriptionDebugLogInterceptor());
|
||||
}
|
||||
|
||||
// Cascading deletes
|
||||
DaoRegistry daoRegistry = appCtx.getBean(DaoRegistry.class);
|
||||
IInterceptorBroadcaster interceptorBroadcaster = appCtx.getBean(IInterceptorBroadcaster.class);
|
||||
if (HapiProperties.getAllowCascadingDeletes()) {
|
||||
CascadingDeleteInterceptor cascadingDeleteInterceptor = new CascadingDeleteInterceptor(
|
||||
daoRegistry, interceptorBroadcaster);
|
||||
getInterceptorService().registerInterceptor(cascadingDeleteInterceptor);
|
||||
}
|
||||
|
||||
// Binary Storage
|
||||
if (HapiProperties.isBinaryStorageEnabled()) {
|
||||
BinaryStorageInterceptor binaryStorageInterceptor = appCtx
|
||||
.getBean(BinaryStorageInterceptor.class);
|
||||
getInterceptorService().registerInterceptor(binaryStorageInterceptor);
|
||||
}
|
||||
|
||||
// Validation
|
||||
IValidatorModule validatorModule;
|
||||
switch (fhirVersion) {
|
||||
case DSTU3:
|
||||
validatorModule = appCtx.getBean("myInstanceValidatorDstu3", IValidatorModule.class);
|
||||
break;
|
||||
case R4:
|
||||
validatorModule = appCtx.getBean("myInstanceValidatorR4", IValidatorModule.class);
|
||||
break;
|
||||
case R5:
|
||||
validatorModule = appCtx.getBean("myInstanceValidatorR5", IValidatorModule.class);
|
||||
break;
|
||||
default:
|
||||
validatorModule = null;
|
||||
break;
|
||||
}
|
||||
if (validatorModule != null) {
|
||||
if (HapiProperties.getValidateRequestsEnabled()) {
|
||||
RequestValidatingInterceptor interceptor = new RequestValidatingInterceptor();
|
||||
interceptor.setFailOnSeverity(ResultSeverityEnum.ERROR);
|
||||
interceptor.setValidatorModules(Collections.singletonList(validatorModule));
|
||||
registerInterceptor(interceptor);
|
||||
}
|
||||
if (HapiProperties.getValidateResponsesEnabled()) {
|
||||
ResponseValidatingInterceptor interceptor = new ResponseValidatingInterceptor();
|
||||
interceptor.setFailOnSeverity(ResultSeverityEnum.ERROR);
|
||||
interceptor.setValidatorModules(Collections.singletonList(validatorModule));
|
||||
registerInterceptor(interceptor);
|
||||
}
|
||||
}
|
||||
|
||||
// GraphQL
|
||||
if (HapiProperties.getGraphqlEnabled()) {
|
||||
if (fhirVersion.isEqualOrNewerThan(FhirVersionEnum.DSTU3)) {
|
||||
registerProvider(appCtx.getBean(GraphQLProvider.class));
|
||||
}
|
||||
}
|
||||
|
||||
if (!HapiProperties.getAllowedBundleTypes().isEmpty()) {
|
||||
String allowedBundleTypesString = HapiProperties.getAllowedBundleTypes();
|
||||
Set<String> allowedBundleTypes = new HashSet<>();
|
||||
Arrays.stream(allowedBundleTypesString.split(",")).forEach(o -> {
|
||||
BundleType type = BundleType.valueOf(o);
|
||||
allowedBundleTypes.add(type.toCode());
|
||||
});
|
||||
DaoConfig config = appCtx.getBean(DaoConfig.class);
|
||||
config.setBundleTypesAllowedForStorage(
|
||||
Collections.unmodifiableSet(new TreeSet<>(allowedBundleTypes)));
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
@@ -92,6 +92,11 @@ cors.allowCredentials=true
|
||||
# cors.allowed_origin=http://localhost:8080,https://localhost:8080,https://fhirtest.uhn.ca
|
||||
cors.allow_origin=*
|
||||
|
||||
##################################################
|
||||
# Allowed Bundle Types for persistence (defaults are: COLLECTION,DOCUMENT,MESSAGE)
|
||||
##################################################
|
||||
#allowed_bundle_types=COLLECTION,DOCUMENT,MESSAGE,TRANSACTION,TRANSACTIONRESPONSE,BATCH,BATCHRESPONSE,HISTORY,SEARCHSET
|
||||
|
||||
##################################################
|
||||
# Subscriptions
|
||||
##################################################
|
||||
|
||||
Reference in New Issue
Block a user