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Cleaned up some tests - more work to do to get some additional tests working in R4.

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This commit is contained in:
Kevin Dougan
2020-12-23 16:36:38 -05:00
parent ebe7e99c37
commit f23553e2ea
9 changed files with 3116 additions and 5076 deletions
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214
src/test/java/ca/uhn/fhir/jpa/starter/ExampleServerR4IT.java
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@@ -45,7 +45,7 @@ import static org.junit.jupiter.api.Assertions.assertTrue;
"spring.datasource.url=jdbc:h2:mem:dbr4",
"hapi.fhir.fhir_version=R4",
"hapi.fhir.cql_enabled=true",
"hapi.fhir.empi_enabled=true",
"hapi.fhir.empi_enabled=false",
"hapi.fhir.subscription.websocket_enabled=true",
//Override is currently required when using Empi as the construction of the Empi beans are ambiguous as they are constructed multiple places. This is evident when running in a spring boot environment
"spring.main.allow-bean-definition-overriding=true"
@@ -79,6 +79,109 @@ public class ExampleServerR4IT implements IServerSupport {
}
@Test
public void testCQLEXM104EvaluateMeasure() throws IOException {
String measureId = "measure-EXM104-8.2.000";
loadBundle("r4/EXM104/EXM104-8.2.000-bundle.json", ourCtx, ourClient);
// http://localhost:8080/fhir/Measure/measure-EXM104-8.2.000/$evaluate-measure?periodStart=2019-01-01&periodEnd=2019-12-31
Parameters inParams = new Parameters();
inParams.addParameter().setName("periodStart").setValue(new StringType("2019-01-01"));
inParams.addParameter().setName("periodEnd").setValue(new StringType("2019-12-31"));
Parameters outParams = ourClient
.operation()
.onInstance(new IdDt("Measure", measureId))
.named("$evaluate-measure")
.withParameters(inParams)
.cacheControl(new CacheControlDirective().setNoCache(true))
.withAdditionalHeader("Content-Type", "application/json")
.useHttpGet()
.execute();
List<Parameters.ParametersParameterComponent> response = outParams.getParameter();
Assert.assertTrue(!response.isEmpty());
Parameters.ParametersParameterComponent component = response.get(0);
Assert.assertTrue(component.getResource() instanceof MeasureReport);
MeasureReport report = (MeasureReport) component.getResource();
Assert.assertEquals("Measure/"+measureId, report.getMeasure());
}
private Bundle loadBundle(String theLocation, FhirContext theCtx, IGenericClient theClient) throws IOException {
String json = stringFromResource(theLocation);
Bundle bundle = (Bundle) theCtx.newJsonParser().parseResource(json);
Bundle result = (Bundle) theClient.transaction().withBundle(bundle).execute();
return result;
}
// Fails with: ca.uhn.fhir.rest.server.exceptions.InternalErrorException: HTTP 500 :
// Failed to call access method: java.lang.IllegalArgumentException:
// Could not load library source for libraries referenced in Measure/Measure/measure-EXM130-FHIR4-7.2.000/_history/1.
//@Test
public void testCQLEXM130EvaluateMeasure() throws IOException {
String measureId = "measure-EXM130-FHIR4-7.2.000";
loadBundle("r4/EXM130/EXM130_FHIR4-7.2.000-bundle.json", ourCtx, ourClient);
// http://localhost:8080/fhir/Measure/measure-EXM130-FHIR4-7.2.000/$evaluate-measure?periodStart=2019-01-01&periodEnd=2019-12-31
Parameters inParams = new Parameters();
// inParams.addParameter().setName("measure").setValue(new StringType("Measure/measure-EXM104-8.2.000"));
// inParams.addParameter().setName("patient").setValue(new StringType("Patient/numer-EXM104-FHIR3"));
inParams.addParameter().setName("periodStart").setValue(new StringType("2019-01-01"));
inParams.addParameter().setName("periodEnd").setValue(new StringType("2019-12-31"));
Parameters outParams = ourClient
.operation()
.onInstance(new IdDt("Measure", measureId))
.named("$evaluate-measure")
.withParameters(inParams)
.cacheControl(new CacheControlDirective().setNoCache(true))
.withAdditionalHeader("Content-Type", "application/json")
.useHttpGet()
.execute();
List<Parameters.ParametersParameterComponent> response = outParams.getParameter();
Assert.assertTrue(!response.isEmpty());
Parameters.ParametersParameterComponent component = response.get(0);
Assert.assertTrue(component.getResource() instanceof MeasureReport);
MeasureReport report = (MeasureReport) component.getResource();
Assert.assertEquals("Measure/"+measureId, report.getMeasure());
}
// Fails with:
// ca.uhn.fhir.rest.server.exceptions.InternalErrorException:
// HTTP 500 Server Error: Failed to call access method: org.opencds.cqf.cql.engine.exception.CqlException:
// Could not resolve expression reference 'null' in library 'EXM349'.
//@Test
public void testCQLEXM349EvaluateMeasure() throws IOException {
String measureId = "measure-EXM349-2.10.000";
loadBundle("r4/EXM349/EXM349-2.10.000-bundle.json", ourCtx, ourClient);
// http://localhost:8080/fhir/Measure/measure-EXM349-2.10.000/$evaluate-measure?periodStart=2019-01-01&periodEnd=2019-12-31
Parameters inParams = new Parameters();
inParams.addParameter().setName("periodStart").setValue(new StringType("2019-01-01"));
inParams.addParameter().setName("periodEnd").setValue(new StringType("2019-12-31"));
Parameters outParams = ourClient
.operation()
.onInstance(new IdDt("Measure", measureId))
.named("$evaluate-measure")
.withParameters(inParams)
.cacheControl(new CacheControlDirective().setNoCache(true))
.withAdditionalHeader("Content-Type", "application/json")
.useHttpGet()
.execute();
List<Parameters.ParametersParameterComponent> response = outParams.getParameter();
Assert.assertTrue(!response.isEmpty());
Parameters.ParametersParameterComponent component = response.get(0);
Assert.assertTrue(component.getResource() instanceof MeasureReport);
MeasureReport report = (MeasureReport) component.getResource();
Assert.assertEquals("Measure/"+measureId, report.getMeasure());
}
//@Test
void testCreateAndRead() {
String methodName = "testCreateResourceConditional";
@@ -115,116 +218,7 @@ public class ExampleServerR4IT implements IServerSupport {
return BundleUtil.toListOfResourcesOfType(ourCtx, bundle, Person.class);
}
@Test
public void testCQLEvaluateMeasureEXM104() throws IOException {
String measureId = "measure-EXM104-8.2.000";
loadBundle("r4/EXM104/EXM104-8.2.000-bundle.json", ourCtx, ourClient);
// http://localhost:8080/fhir/Measure/measure-EXM104-8.2.000/$evaluate-measure?periodStart=2019-01-01&periodEnd=2019-12-31
Parameters inParams = new Parameters();
// inParams.addParameter().setName("measure").setValue(new StringType("Measure/measure-EXM104-8.2.000"));
// inParams.addParameter().setName("patient").setValue(new StringType("Patient/numer-EXM104-FHIR3"));
inParams.addParameter().setName("periodStart").setValue(new StringType("2019-01-01"));
inParams.addParameter().setName("periodEnd").setValue(new StringType("2019-12-31"));
Parameters outParams = ourClient
.operation()
.onInstance(new IdDt("Measure", measureId))
.named("$evaluate-measure")
.withParameters(inParams)
.cacheControl(new CacheControlDirective().setNoCache(true))
.withAdditionalHeader("Content-Type", "application/json")
.useHttpGet()
.execute();
List<Parameters.ParametersParameterComponent> response = outParams.getParameter();
Assert.assertTrue(!response.isEmpty());
Parameters.ParametersParameterComponent component = response.get(0);
Assert.assertTrue(component.getResource() instanceof MeasureReport);
MeasureReport report = (MeasureReport) component.getResource();
Assert.assertEquals("Measure/"+measureId, report.getMeasure());
}
private Bundle loadBundle(String theLocation, FhirContext theCtx, IGenericClient theClient) throws IOException {
String json = stringFromResource(theLocation);
Bundle bundle = (Bundle) theCtx.newJsonParser().parseResource(json);
Bundle result = (Bundle) theClient.transaction().withBundle(bundle).execute();
return result;
}
// Fails with: ca.uhn.fhir.rest.server.exceptions.InternalErrorException: HTTP 500 :
// Failed to call access method: java.lang.IllegalArgumentException:
// Could not load library source for libraries referenced in Measure/Measure/measure-EXM125-FHIR4-7.2.000/_history/1.
//@Test
public void testCQLEvaluateMeasureEXM125() throws IOException {
String measureId = "measure-EXM125-FHIR4-7.2.000";
loadBundle("r4/EXM125/library-deps-EXM125_FHIR4-7.2.000-bundle.json", ourCtx, ourClient);
loadResource("r4/EXM125/library-EXM125_FHIR4-7.2.000.json", ourCtx, myDaoRegistry);
loadBundle("r4/EXM125/EXM125_FHIR4-7.2.000-bundle.json", ourCtx, ourClient);
loadResource("r4/EXM125/measure-EXM125_FHIR4-7.2.000.json", ourCtx, myDaoRegistry);
// http://localhost:8080/fhir/Measure/measure-EXM125-FHIR4-7.2.000/$evaluate-measure?periodStart=2019-01-01&periodEnd=2019-12-31
Parameters inParams = new Parameters();
// inParams.addParameter().setName("measure").setValue(new StringType("Measure/measure-EXM104-8.2.000"));
// inParams.addParameter().setName("patient").setValue(new StringType("Patient/numer-EXM104-FHIR3"));
inParams.addParameter().setName("periodStart").setValue(new StringType("2019-01-01"));
inParams.addParameter().setName("periodEnd").setValue(new StringType("2019-12-31"));
Parameters outParams = ourClient
.operation()
.onInstance(new IdDt("Measure", measureId))
.named("$evaluate-measure")
.withParameters(inParams)
.cacheControl(new CacheControlDirective().setNoCache(true))
.withAdditionalHeader("Content-Type", "application/json")
.useHttpGet()
.execute();
List<Parameters.ParametersParameterComponent> response = outParams.getParameter();
Assert.assertTrue(!response.isEmpty());
Parameters.ParametersParameterComponent component = response.get(0);
Assert.assertTrue(component.getResource() instanceof MeasureReport);
MeasureReport report = (MeasureReport) component.getResource();
Assert.assertEquals("Measure/"+measureId, report.getMeasure());
}
// Fails with: ca.uhn.fhir.rest.server.exceptions.InternalErrorException: HTTP 500 :
// Failed to call access method: java.lang.IllegalArgumentException:
// Could not load library source for libraries referenced in Measure/Measure/measure-EXM130-FHIR4-7.2.000/_history/1.
//@Test
public void testCQLEvaluateMeasureEXM130() throws IOException {
String measureId = "measure-EXM130-FHIR4-7.2.000";
loadBundle("r4/EXM130/EXM130_FHIR4-7.2.000-bundle.json", ourCtx, ourClient);
// http://localhost:8080/fhir/Measure/measure-EXM130-FHIR4-7.2.000/$evaluate-measure?periodStart=2019-01-01&periodEnd=2019-12-31
Parameters inParams = new Parameters();
// inParams.addParameter().setName("measure").setValue(new StringType("Measure/measure-EXM104-8.2.000"));
// inParams.addParameter().setName("patient").setValue(new StringType("Patient/numer-EXM104-FHIR3"));
inParams.addParameter().setName("periodStart").setValue(new StringType("2019-01-01"));
inParams.addParameter().setName("periodEnd").setValue(new StringType("2019-12-31"));
Parameters outParams = ourClient
.operation()
.onInstance(new IdDt("Measure", measureId))
.named("$evaluate-measure")
.withParameters(inParams)
.cacheControl(new CacheControlDirective().setNoCache(true))
.withAdditionalHeader("Content-Type", "application/json")
.useHttpGet()
.execute();
List<Parameters.ParametersParameterComponent> response = outParams.getParameter();
Assert.assertTrue(!response.isEmpty());
Parameters.ParametersParameterComponent component = response.get(0);
Assert.assertTrue(component.getResource() instanceof MeasureReport);
MeasureReport report = (MeasureReport) component.getResource();
Assert.assertEquals("Measure/"+measureId, report.getMeasure());
}
@Test
public void testWebsocketSubscription() throws Exception {
/*
* Create subscription

4122
src/test/resources/r4/EXM125/EXM125_FHIR4-7.2.000-bundle.json
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126
src/test/resources/r4/EXM125/library-EXM125_FHIR4-7.2.000.json
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400
src/test/resources/r4/EXM125/library-deps-EXM125_FHIR4-7.2.000-bundle.json
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310
src/test/resources/r4/EXM125/measure-EXM125_FHIR4-7.2.000.json
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12
src/test/resources/r4/EXM130/EXM130_FHIR4-7.2.000-bundle.json
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@@ -114,7 +114,7 @@
"type": {
"coding": [
{
"system": "http://hl7.org/fhir/codesystem-library-type.html",
"system": "http://terminology.hl7.org/CodeSystem/library-type",
"code": "logic-library"
}
]
@@ -158,7 +158,7 @@
"type": {
"coding": [
{
"system": "http://hl7.org/fhir/codesystem-library-type.html",
"system": "http://terminology.hl7.org/CodeSystem/library-type",
"code": "logic-library"
}
]
@@ -255,7 +255,7 @@
"type": {
"coding": [
{
"system": "http://hl7.org/fhir/codesystem-library-type.html",
"system": "http://terminology.hl7.org/CodeSystem/library-type",
"code": "logic-library"
}
]
@@ -2263,7 +2263,7 @@
"type": {
"coding": [
{
"system": "http://hl7.org/fhir/codesystem-library-type.html",
"system": "http://terminology.hl7.org/CodeSystem/library-type",
"code": "logic-library"
}
]
@@ -3851,7 +3851,7 @@
"type": {
"coding": [
{
"system": "http://hl7.org/fhir/codesystem-library-type.html",
"system": "http://terminology.hl7.org/CodeSystem/library-type",
"code": "logic-library"
}
]
@@ -3959,7 +3959,7 @@
"type": {
"coding": [
{
"system": "http://hl7.org/fhir/codesystem-library-type.html",
"system": "http://terminology.hl7.org/CodeSystem/library-type",
"code": "logic-library"
}
]

3003
src/test/resources/r4/EXM349/EXM349-2.10.000-bundle.json Normal file
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