diff --git a/pom.xml b/pom.xml index d1eb03b..7293b30 100644 --- a/pom.xml +++ b/pom.xml @@ -4,7 +4,7 @@ 4.0.0 - + - @@ -566,8 +552,8 @@ - - + + jetty diff --git a/src/main/java/ca/uhn/fhir/jpa/starter/common/FhirServerConfigCommon.java b/src/main/java/ca/uhn/fhir/jpa/starter/common/FhirServerConfigCommon.java index 60cf2d8..a80524e 100644 --- a/src/main/java/ca/uhn/fhir/jpa/starter/common/FhirServerConfigCommon.java +++ b/src/main/java/ca/uhn/fhir/jpa/starter/common/FhirServerConfigCommon.java @@ -137,7 +137,6 @@ public class FhirServerConfigCommon { daoConfig.setInlineResourceTextBelowSize(appProperties.getInline_resource_storage_below_size()); } - daoConfig.setStoreResourceInHSearchIndex(appProperties.getStore_resource_in_lucene_index_enabled()); daoConfig.getModelConfig().setNormalizedQuantitySearchLevel(appProperties.getNormalized_quantity_search_level()); daoConfig.getModelConfig().setIndexOnContainedResources(appProperties.getEnable_index_contained_resource()); diff --git a/src/main/java/ca/uhn/fhir/jpa/starter/common/FhirServerConfigDstu2.java b/src/main/java/ca/uhn/fhir/jpa/starter/common/FhirServerConfigDstu2.java index cedf169..baf5044 100644 --- a/src/main/java/ca/uhn/fhir/jpa/starter/common/FhirServerConfigDstu2.java +++ b/src/main/java/ca/uhn/fhir/jpa/starter/common/FhirServerConfigDstu2.java @@ -14,7 +14,10 @@ import org.springframework.context.annotation.Import; @Configuration @Conditional(OnDSTU2Condition.class) -@Import({StarterJpaConfig.class, JpaDstu2Config.class}) +@Import({ + JpaDstu2Config.class, + StarterJpaConfig.class +}) public class FhirServerConfigDstu2 { @Bean public ITermLoaderSvc termLoaderService(ITermDeferredStorageSvc theDeferredStorageSvc, ITermCodeSystemStorageSvc theCodeSystemStorageSvc) { diff --git a/src/main/java/ca/uhn/fhir/jpa/starter/common/FhirServerConfigDstu3.java b/src/main/java/ca/uhn/fhir/jpa/starter/common/FhirServerConfigDstu3.java index e0056bc..0e0c763 100644 --- a/src/main/java/ca/uhn/fhir/jpa/starter/common/FhirServerConfigDstu3.java +++ b/src/main/java/ca/uhn/fhir/jpa/starter/common/FhirServerConfigDstu3.java @@ -10,8 +10,8 @@ import org.springframework.context.annotation.Import; @Configuration @Conditional(OnDSTU3Condition.class) @Import({ - StarterJpaConfig.class, JpaDstu3Config.class, + StarterJpaConfig.class, StarterCqlDstu3Config.class, ElasticsearchConfig.class}) public class FhirServerConfigDstu3 { diff --git a/src/main/java/ca/uhn/fhir/jpa/starter/common/FhirServerConfigR4.java b/src/main/java/ca/uhn/fhir/jpa/starter/common/FhirServerConfigR4.java index 4c212ef..6ee7a99 100644 --- a/src/main/java/ca/uhn/fhir/jpa/starter/common/FhirServerConfigR4.java +++ b/src/main/java/ca/uhn/fhir/jpa/starter/common/FhirServerConfigR4.java @@ -10,8 +10,8 @@ import org.springframework.context.annotation.Import; @Configuration @Conditional(OnR4Condition.class) @Import({ - StarterJpaConfig.class, JpaR4Config.class, + StarterJpaConfig.class, StarterCqlR4Config.class, ElasticsearchConfig.class }) diff --git a/src/main/java/ca/uhn/fhir/jpa/starter/common/StarterJpaConfig.java b/src/main/java/ca/uhn/fhir/jpa/starter/common/StarterJpaConfig.java index 19bba57..ed15015 100644 --- a/src/main/java/ca/uhn/fhir/jpa/starter/common/StarterJpaConfig.java +++ b/src/main/java/ca/uhn/fhir/jpa/starter/common/StarterJpaConfig.java @@ -12,9 +12,9 @@ import ca.uhn.fhir.context.support.IValidationSupport; import ca.uhn.fhir.interceptor.api.IInterceptorBroadcaster; import ca.uhn.fhir.jpa.api.IDaoRegistry; import ca.uhn.fhir.jpa.api.config.DaoConfig; +import ca.uhn.fhir.jpa.api.config.ThreadPoolFactoryConfig; import ca.uhn.fhir.jpa.api.dao.DaoRegistry; import ca.uhn.fhir.jpa.api.dao.IFhirSystemDao; -import ca.uhn.fhir.jpa.batch.config.NonPersistedBatchConfigurer; import ca.uhn.fhir.jpa.binary.interceptor.BinaryStorageInterceptor; import ca.uhn.fhir.jpa.binary.provider.BinaryAccessProvider; import ca.uhn.fhir.jpa.bulk.export.provider.BulkDataExportProvider; @@ -26,6 +26,8 @@ import ca.uhn.fhir.jpa.dao.IFulltextSearchSvc; import ca.uhn.fhir.jpa.dao.mdm.MdmLinkDaoJpaImpl; import ca.uhn.fhir.jpa.dao.search.HSearchSortHelperImpl; import ca.uhn.fhir.jpa.dao.search.IHSearchSortHelper; +import ca.uhn.fhir.jpa.dao.tx.HapiTransactionService; +import ca.uhn.fhir.jpa.delete.ThreadSafeResourceDeleterSvc; import ca.uhn.fhir.jpa.graphql.GraphQLProvider; import ca.uhn.fhir.jpa.interceptor.CascadingDeleteInterceptor; import ca.uhn.fhir.jpa.interceptor.validation.RepositoryValidatingInterceptor; @@ -62,14 +64,10 @@ import ca.uhn.fhir.validation.ResultSeverityEnum; import com.google.common.base.Strings; import com.google.common.collect.ImmutableList; import org.hl7.fhir.common.hapi.validation.support.CachingValidationSupport; -import org.springframework.batch.core.configuration.annotation.BatchConfigurer; import org.springframework.beans.factory.annotation.Autowired; import org.springframework.beans.factory.config.ConfigurableListableBeanFactory; import org.springframework.boot.autoconfigure.condition.ConditionalOnProperty; -import org.springframework.context.annotation.Bean; -import org.springframework.context.annotation.Conditional; -import org.springframework.context.annotation.Configuration; -import org.springframework.context.annotation.Primary; +import org.springframework.context.annotation.*; import org.springframework.core.env.ConfigurableEnvironment; import org.springframework.http.HttpHeaders; import org.springframework.orm.jpa.JpaTransactionManager; @@ -83,6 +81,9 @@ import java.util.*; import static ca.uhn.fhir.jpa.starter.common.validation.IRepositoryValidationInterceptorFactory.ENABLE_REPOSITORY_VALIDATING_INTERCEPTOR; @Configuration +@Import( + ThreadPoolFactoryConfig.class +) public class StarterJpaConfig { private static final org.slf4j.Logger ourLog = org.slf4j.LoggerFactory.getLogger(StarterJpaConfig.class); @@ -103,10 +104,6 @@ public class StarterJpaConfig { return ValidationSupportConfigUtil.newCachingValidationSupport(theJpaValidationSupportChain); } - @Bean - public BatchConfigurer batchConfigurer() { - return new NonPersistedBatchConfigurer(); - } @Autowired private ConfigurableEnvironment configurableEnvironment; @@ -123,6 +120,7 @@ public class StarterJpaConfig { return pagingProvider; } + @Bean public IResourceSupportedSvc resourceSupportedSvc(IDaoRegistry theDaoRegistry) { return new DaoRegistryResourceSupportedSvc(theDaoRegistry); @@ -150,7 +148,7 @@ public class StarterJpaConfig { @Bean @Primary - public JpaTransactionManager hapiTransactionManager(EntityManagerFactory entityManagerFactory) { + public JpaTransactionManager transactionManager(EntityManagerFactory entityManagerFactory) { JpaTransactionManager retVal = new JpaTransactionManager(); retVal.setEntityManagerFactory(entityManagerFactory); return retVal; @@ -246,7 +244,7 @@ public class StarterJpaConfig { } @Bean - public RestfulServer restfulServer(IFhirSystemDao fhirSystemDao, AppProperties appProperties, DaoRegistry daoRegistry, Optional mdmProviderProvider, IJpaSystemProvider jpaSystemProvider, ResourceProviderFactory resourceProviderFactory, DaoConfig daoConfig, ISearchParamRegistry searchParamRegistry, IValidationSupport theValidationSupport, DatabaseBackedPagingProvider databaseBackedPagingProvider, LoggingInterceptor loggingInterceptor, Optional terminologyUploaderProvider, Optional subscriptionTriggeringProvider, Optional corsInterceptor, IInterceptorBroadcaster interceptorBroadcaster, Optional binaryAccessProvider, BinaryStorageInterceptor binaryStorageInterceptor, IValidatorModule validatorModule, Optional graphQLProvider, BulkDataExportProvider bulkDataExportProvider, BulkDataImportProvider bulkDataImportProvider, ValueSetOperationProvider theValueSetOperationProvider, ReindexProvider reindexProvider, PartitionManagementProvider partitionManagementProvider, Optional repositoryValidatingInterceptor, IPackageInstallerSvc packageInstallerSvc) { + public RestfulServer restfulServer(IFhirSystemDao fhirSystemDao, AppProperties appProperties, DaoRegistry daoRegistry, Optional mdmProviderProvider, IJpaSystemProvider jpaSystemProvider, ResourceProviderFactory resourceProviderFactory, DaoConfig daoConfig, ISearchParamRegistry searchParamRegistry, IValidationSupport theValidationSupport, DatabaseBackedPagingProvider databaseBackedPagingProvider, LoggingInterceptor loggingInterceptor, Optional terminologyUploaderProvider, Optional subscriptionTriggeringProvider, Optional corsInterceptor, IInterceptorBroadcaster interceptorBroadcaster, Optional binaryAccessProvider, BinaryStorageInterceptor binaryStorageInterceptor, IValidatorModule validatorModule, Optional graphQLProvider, BulkDataExportProvider bulkDataExportProvider, BulkDataImportProvider bulkDataImportProvider, ValueSetOperationProvider theValueSetOperationProvider, ReindexProvider reindexProvider, PartitionManagementProvider partitionManagementProvider, Optional repositoryValidatingInterceptor, IPackageInstallerSvc packageInstallerSvc, ThreadSafeResourceDeleterSvc theThreadSafeResourceDeleterSvc) { RestfulServer fhirServer = new RestfulServer(fhirSystemDao.getContext()); @@ -352,7 +350,7 @@ public class StarterJpaConfig { } if (appProperties.getAllow_cascading_deletes()) { - CascadingDeleteInterceptor cascadingDeleteInterceptor = new CascadingDeleteInterceptor(fhirSystemDao.getContext(), daoRegistry, interceptorBroadcaster); + CascadingDeleteInterceptor cascadingDeleteInterceptor = new CascadingDeleteInterceptor(fhirSystemDao.getContext(), daoRegistry, interceptorBroadcaster, theThreadSafeResourceDeleterSvc); fhirServer.registerInterceptor(cascadingDeleteInterceptor); } diff --git a/src/main/resources/application.yaml b/src/main/resources/application.yaml index a651fa9..19a1666 100644 --- a/src/main/resources/application.yaml +++ b/src/main/resources/application.yaml @@ -39,16 +39,17 @@ spring: # hibernate.cache.use_second_level_cache: false # hibernate.cache.use_structured_entries: false # hibernate.cache.use_minimal_puts: false - ### These settings will enable fulltext search with lucene - hibernate.search.enabled: false - # hibernate.search.backend.type: lucene - # hibernate.search.backend.analysis.configurer: ca.uhn.fhir.jpa.search.HapiHSearchAnalysisConfigurers$HapiLuceneAnalysisConfigurer - # hibernate.search.backend.directory.type: local-filesystem - # hibernate.search.backend.directory.root: target/lucenefiles - # hibernate.search.backend.lucene_version: lucene_current - batch: - job: - enabled: false + ### These settings will enable fulltext search with lucene or elastic + hibernate.search.enabled: true + ### lucene parameters +# hibernate.search.backend.type: lucene +# hibernate.search.backend.analysis.configurer: ca.uhn.fhir.jpa.search.HapiHSearchAnalysisConfigurers$HapiLuceneAnalysisConfigurer +# hibernate.search.backend.directory.type: local-filesystem +# hibernate.search.backend.directory.root: target/lucenefiles +# hibernate.search.backend.lucene_version: lucene_current + ### elastic parameters ===> see also elasticsearch section below <=== + hibernate.search.backend.type: elasticsearch + hibernate.search.backend.analysis.configurer: ca.uhn.fhir.jpa.search.HapiHSearchAnalysisConfigurers$HapiElasticAnalysisConfigurer hapi: fhir: ### This enables the swagger-ui at /fhir/swagger-ui/index.html as well as the /fhir/api-docs (see https://hapifhir.io/hapi-fhir/docs/server_plain/openapi.html) diff --git a/src/test/java/ca/uhn/fhir/jpa/starter/ElasticsearchLastNR4IT.java b/src/test/java/ca/uhn/fhir/jpa/starter/ElasticsearchLastNR4IT.java index 6ad49c6..3a84047 100644 --- a/src/test/java/ca/uhn/fhir/jpa/starter/ElasticsearchLastNR4IT.java +++ b/src/test/java/ca/uhn/fhir/jpa/starter/ElasticsearchLastNR4IT.java @@ -38,7 +38,6 @@ import org.testcontainers.elasticsearch.ElasticsearchContainer; @ExtendWith(SpringExtension.class) @SpringBootTest(webEnvironment = SpringBootTest.WebEnvironment.RANDOM_PORT, classes = Application.class, properties = { - "spring.batch.job.enabled=false", "spring.datasource.url=jdbc:h2:mem:dbr4", "hapi.fhir.fhir_version=r4", "hapi.fhir.lastn_enabled=true", diff --git a/src/test/java/ca/uhn/fhir/jpa/starter/ExampleServerDstu2IT.java b/src/test/java/ca/uhn/fhir/jpa/starter/ExampleServerDstu2IT.java index 964fae2..e20aff8 100644 --- a/src/test/java/ca/uhn/fhir/jpa/starter/ExampleServerDstu2IT.java +++ b/src/test/java/ca/uhn/fhir/jpa/starter/ExampleServerDstu2IT.java @@ -18,7 +18,6 @@ import static org.junit.jupiter.api.Assertions.assertEquals; @ExtendWith(SpringExtension.class) @SpringBootTest(webEnvironment = SpringBootTest.WebEnvironment.RANDOM_PORT, classes = Application.class, properties = { - "spring.batch.job.enabled=false", "hapi.fhir.fhir_version=dstu2", "spring.datasource.url=jdbc:h2:mem:dbr2", }) diff --git a/src/test/java/ca/uhn/fhir/jpa/starter/ExampleServerDstu3IT.java b/src/test/java/ca/uhn/fhir/jpa/starter/ExampleServerDstu3IT.java index 0dfcf83..926a500 100644 --- a/src/test/java/ca/uhn/fhir/jpa/starter/ExampleServerDstu3IT.java +++ b/src/test/java/ca/uhn/fhir/jpa/starter/ExampleServerDstu3IT.java @@ -39,7 +39,6 @@ import static org.junit.jupiter.api.Assertions.assertEquals; @ExtendWith(SpringExtension.class) @SpringBootTest(webEnvironment = SpringBootTest.WebEnvironment.RANDOM_PORT, classes = Application.class, properties = { - "spring.batch.job.enabled=false", "spring.datasource.url=jdbc:h2:mem:dbr3", "hapi.fhir.cql_enabled=true", "hapi.fhir.fhir_version=dstu3", diff --git a/src/test/java/ca/uhn/fhir/jpa/starter/ExampleServerR4IT.java b/src/test/java/ca/uhn/fhir/jpa/starter/ExampleServerR4IT.java index 27a8c21..278a5f0 100644 --- a/src/test/java/ca/uhn/fhir/jpa/starter/ExampleServerR4IT.java +++ b/src/test/java/ca/uhn/fhir/jpa/starter/ExampleServerR4IT.java @@ -31,7 +31,6 @@ import static org.junit.jupiter.api.Assertions.assertEquals; import static org.junit.jupiter.api.Assertions.assertNotNull; @SpringBootTest(webEnvironment = SpringBootTest.WebEnvironment.RANDOM_PORT, classes = Application.class, properties = { - "spring.batch.job.enabled=false", "spring.datasource.url=jdbc:h2:mem:dbr4", "hapi.fhir.enable_repository_validating_interceptor=true", "hapi.fhir.fhir_version=r4", diff --git a/src/test/java/ca/uhn/fhir/jpa/starter/ExampleServerR5IT.java b/src/test/java/ca/uhn/fhir/jpa/starter/ExampleServerR5IT.java index 055d1ab..ddbd6a7 100644 --- a/src/test/java/ca/uhn/fhir/jpa/starter/ExampleServerR5IT.java +++ b/src/test/java/ca/uhn/fhir/jpa/starter/ExampleServerR5IT.java @@ -34,7 +34,6 @@ import org.springframework.test.context.junit.jupiter.SpringExtension; @ExtendWith(SpringExtension.class) @SpringBootTest(webEnvironment = SpringBootTest.WebEnvironment.RANDOM_PORT, classes = Application.class, properties = { - "spring.batch.job.enabled=false", "spring.datasource.url=jdbc:h2:mem:dbr5", "hapi.fhir.fhir_version=r5", "hapi.fhir.subscription.websocket_enabled=true", @@ -80,7 +79,7 @@ public class ExampleServerR5IT { subscription.getContained().add(topic); subscription.setTopic("#1"); subscription.setReason("Monitor new neonatal function (note, age will be determined by the monitor)"); - subscription.setStatus(Enumerations.SubscriptionState.REQUESTED); + subscription.setStatus(Enumerations.SubscriptionStatusCodes.REQUESTED); subscription.getChannelType() .setSystem("http://terminology.hl7.org/CodeSystem/subscription-channel-type") .setCode("websocket"); diff --git a/src/test/java/ca/uhn/fhir/jpa/starter/MultitenantServerR4IT.java b/src/test/java/ca/uhn/fhir/jpa/starter/MultitenantServerR4IT.java index 29af5e7..9d340b1 100644 --- a/src/test/java/ca/uhn/fhir/jpa/starter/MultitenantServerR4IT.java +++ b/src/test/java/ca/uhn/fhir/jpa/starter/MultitenantServerR4IT.java @@ -20,7 +20,6 @@ import static org.junit.jupiter.api.Assertions.assertEquals; @ExtendWith(SpringExtension.class) @SpringBootTest(webEnvironment = SpringBootTest.WebEnvironment.RANDOM_PORT, classes = Application.class, properties = { - "spring.batch.job.enabled=false", "spring.datasource.url=jdbc:h2:mem:dbr4-mt", "hapi.fhir.fhir_version=r4", "hapi.fhir.subscription.websocket_enabled=true", diff --git a/src/test/resources/application-integrationtest.yaml b/src/test/resources/application-integrationtest.yaml deleted file mode 100644 index 3ab7240..0000000 --- a/src/test/resources/application-integrationtest.yaml +++ /dev/null @@ -1,108 +0,0 @@ -spring: - datasource: - url: 'jdbc:h2:file:./target/database/h2' - username: sa - password: null - driverClassName: org.h2.Driver - max-active: 15 - profiles: - ### This is the FHIR version. Choose between, dstu2, dstu3, r4 or r5 - active: r4 - -hapi: - fhir: - #supported_resource_types: - # - Patient - # - Observation -# allow_cascading_deletes: true -# allow_contains_searches: true -# allow_external_references: true -# allow_multiple_delete: true -# allow_override_default_search_params: true -# allow_placeholder_references: true -# auto_create_placeholder_reference_targets: false -# cql_enabled: false -# default_encoding: JSON -# default_pretty_print: true -# default_page_size: 20 -# delete_expunge_enabled: true -# enable_index_missing_fields: false -# enforce_referential_integrity_on_delete: false -# enforce_referential_integrity_on_write: false -# etag_support_enabled: true -# expunge_enabled: true -# daoconfig_client_id_strategy: null -# fhirpath_interceptor_enabled: false -# filter_search_enabled: true -# graphql_enabled: true -# local_base_urls: -# - http://hapi.fhir.org/baseR4 - #partitioning: - # cross_partition_reference_mode: true - # multitenancy_enabled: true - # partitioning_include_in_search_hashes: true - #cors: - # allow_Credentials: true - # Supports multiple, comma separated allowed origin entries - # cors.allowed_origin=http://localhost:8080,https://localhost:8080,https://fhirtest.uhn.ca - # allowed_origin: - # - '*' - -# logger: -# error_format: 'ERROR - ${requestVerb} ${requestUrl}' -# format: >- -# Path[${servletPath}] Source[${requestHeader.x-forwarded-for}] -# Operation[${operationType} ${operationName} ${idOrResourceName}] -# UA[${requestHeader.user-agent}] Params[${requestParameters}] -# ResponseEncoding[${responseEncodingNoDefault}] -# log_exceptions: true -# name: fhirtest.access -# max_binary_size: 104857600 -# max_page_size: 200 -# retain_cached_searches_mins: 60 -# reuse_cached_search_results_millis: 60000 - tester: - - - id: home - name: Local Tester - server_address: 'http://localhost:8080/hapi-fhir-jpaserver/fhir' - refuse_to_fetch_third_party_urls: false - fhir_version: R4 - - - id: global - name: Global Tester - server_address: "http://hapi.fhir.org/baseR4" - refuse_to_fetch_third_party_urls: false - fhir_version: R4 -# validation: -# requests_enabled: true -# responses_enabled: true -# binary_storage_enabled: true -# bulk_export_enabled: true -# partitioning_multitenancy_enabled: -# subscription: -# resthook_enabled: false -# websocket_enabled: false -# email: -# from: some@test.com -# host: google.com -# port: -# username: -# password: -# auth: -# startTlsEnable: -# startTlsRequired: -# quitWait: - - -# -#elasticsearch: -# debug: -# pretty_print_json_log: false -# refresh_after_write: false -# enabled: false -# password: SomePassword -# required_index_status: YELLOW -# rest_url: 'http://localhost:9200' -# schema_management_strategy: CREATE -# username: SomeUsername diff --git a/src/test/resources/application.yaml b/src/test/resources/application.yaml new file mode 100644 index 0000000..4794df5 --- /dev/null +++ b/src/test/resources/application.yaml @@ -0,0 +1,186 @@ +spring: + main: + allow-circular-references: true + #allow-bean-definition-overriding: true + flyway: + enabled: false + check-location: false + baselineOnMigrate: true + datasource: + url: jdbc:h2:mem:test_mem + username: sa + password: null + driverClassName: org.h2.Driver + max-active: 15 + + # database connection pool size + hikari: + maximum-pool-size: 10 + jpa: + properties: + hibernate.format_sql: false + hibernate.show_sql: false + #Hibernate dialect is automatically detected except Postgres and H2. + #If using H2, then supply the value of ca.uhn.fhir.jpa.model.dialect.HapiFhirH2Dialect + #If using postgres, then supply the value of ca.uhn.fhir.jpa.model.dialect.HapiFhirPostgres94Dialect + + hibernate.dialect: ca.uhn.fhir.jpa.model.dialect.HapiFhirH2Dialect + # hibernate.hbm2ddl.auto: update + # hibernate.jdbc.batch_size: 20 + # hibernate.cache.use_query_cache: false + # hibernate.cache.use_second_level_cache: false + # hibernate.cache.use_structured_entries: false + # hibernate.cache.use_minimal_puts: false + ### These settings will enable fulltext search with lucene or elastic + hibernate.search.enabled: false + ### lucene parameters + # hibernate.search.backend.type: lucene + # hibernate.search.backend.analysis.configurer: ca.uhn.fhir.jpa.search.HapiHSearchAnalysisConfigurers$HapiLuceneAnalysisConfigurer + # hibernate.search.backend.directory.type: local-filesystem + # hibernate.search.backend.directory.root: target/lucenefiles + # hibernate.search.backend.lucene_version: lucene_current + ### elastic parameters ===> see also elasticsearch section below <=== +# hibernate.search.backend.type: elasticsearch +# hibernate.search.backend.analysis.configurer: ca.uhn.fhir.jpa.search.HapiHSearchAnalysisConfigurers$HapiElasticAnalysisConfigurer + +hapi: + fhir: + ### This enables the swagger-ui at /fhir/swagger-ui/index.html as well as the /fhir/api-docs (see https://hapifhir.io/hapi-fhir/docs/server_plain/openapi.html) + openapi_enabled: true + ### This is the FHIR version. Choose between, DSTU2, DSTU3, R4 or R5 + fhir_version: R4 + ### enable to use the ApacheProxyAddressStrategy which uses X-Forwarded-* headers + ### to determine the FHIR server address + # use_apache_address_strategy: false + ### forces the use of the https:// protocol for the returned server address. + ### alternatively, it may be set using the X-Forwarded-Proto header. + # use_apache_address_strategy_https: false + ### enable to set the Server URL + # server_address: http://hapi.fhir.org/baseR4 + # defer_indexing_for_codesystems_of_size: 101 + # install_transitive_ig_dependencies: true + # implementationguides: + ### example from registry (packages.fhir.org) + # swiss: + # name: swiss.mednet.fhir + # version: 0.8.0 + # example not from registry + # ips_1_0_0: + # url: https://build.fhir.org/ig/HL7/fhir-ips/package.tgz + # name: hl7.fhir.uv.ips + # version: 1.0.0 + # supported_resource_types: + # - Patient + # - Observation + # allow_cascading_deletes: true + # allow_contains_searches: true + # allow_external_references: true + # allow_multiple_delete: true + # allow_override_default_search_params: true + # auto_create_placeholder_reference_targets: false + # cql_enabled: true + # default_encoding: JSON + # default_pretty_print: true + # default_page_size: 20 + # delete_expunge_enabled: true + # enable_repository_validating_interceptor: false + # enable_index_missing_fields: false + # enable_index_of_type: true + # enable_index_contained_resource: false + ### !!Extended Lucene/Elasticsearch Indexing is still a experimental feature, expect some features (e.g. _total=accurate) to not work as expected!! + ### more information here: https://hapifhir.io/hapi-fhir/docs/server_jpa/elastic.html + advanced_lucene_indexing: false + # enforce_referential_integrity_on_delete: false + # This is an experimental feature, and does not fully support _total and other FHIR features. + # enforce_referential_integrity_on_delete: false + # enforce_referential_integrity_on_write: false + # etag_support_enabled: true + # expunge_enabled: true + # daoconfig_client_id_strategy: null + # client_id_strategy: ALPHANUMERIC + # fhirpath_interceptor_enabled: false + # filter_search_enabled: true + # graphql_enabled: true + # narrative_enabled: true + # mdm_enabled: true + # local_base_urls: + # - https://hapi.fhir.org/baseR4 + mdm_enabled: false + # partitioning: + # allow_references_across_partitions: false + # partitioning_include_in_search_hashes: false + #cors: + # allow_Credentials: true + # These are allowed_origin patterns, see: https://docs.spring.io/spring-framework/docs/current/javadoc-api/org/springframework/web/cors/CorsConfiguration.html#setAllowedOriginPatterns-java.util.List- + # allowed_origin: + # - '*' + + # Search coordinator thread pool sizes + search-coord-core-pool-size: 20 + search-coord-max-pool-size: 100 + search-coord-queue-capacity: 200 + + # Threadpool size for BATCH'ed GETs in a bundle. + # bundle_batch_pool_size: 10 + # bundle_batch_pool_max_size: 50 + + # logger: + # error_format: 'ERROR - ${requestVerb} ${requestUrl}' + # format: >- + # Path[${servletPath}] Source[${requestHeader.x-forwarded-for}] + # Operation[${operationType} ${operationName} ${idOrResourceName}] + # UA[${requestHeader.user-agent}] Params[${requestParameters}] + # ResponseEncoding[${responseEncodingNoDefault}] + # log_exceptions: true + # name: fhirtest.access + # max_binary_size: 104857600 + # max_page_size: 200 + # retain_cached_searches_mins: 60 + # reuse_cached_search_results_millis: 60000 + tester: + home: + name: Local Tester + server_address: 'http://localhost:8080/fhir' + refuse_to_fetch_third_party_urls: false + fhir_version: R4 + global: + name: Global Tester + server_address: "http://hapi.fhir.org/baseR4" + refuse_to_fetch_third_party_urls: false + fhir_version: R4 +# validation: +# requests_enabled: true +# responses_enabled: true +# binary_storage_enabled: true +# bulk_export_enabled: true +# subscription: +# resthook_enabled: true +# websocket_enabled: false +# email: +# from: some@test.com +# host: google.com +# port: +# username: +# password: +# auth: +# startTlsEnable: +# startTlsRequired: +# quitWait: +# lastn_enabled: true +# store_resource_in_lucene_index_enabled: true +### This is configuration for normalized quantity serach level default is 0 +### 0: NORMALIZED_QUANTITY_SEARCH_NOT_SUPPORTED - default +### 1: NORMALIZED_QUANTITY_STORAGE_SUPPORTED +### 2: NORMALIZED_QUANTITY_SEARCH_SUPPORTED +# normalized_quantity_search_level: 2 +#elasticsearch: +# debug: +# pretty_print_json_log: false +# refresh_after_write: false +# enabled: false +# password: SomePassword +# required_index_status: YELLOW +# rest_url: 'localhost:9200' +# protocol: 'http' +# schema_management_strategy: CREATE +# username: SomeUsername