Personal-Twin/hapi-fhir-jpaserver-starter
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Updated helm chart and dockerfile dependencies (#540)

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* Updated Helm chart to use hapi fhir image v6.6.0

* Updated maven base image due to openjdk deprecation

* Removed superfluous app/main.war in entrypoint

* Update curlimages/curl to 8.1.2
This commit is contained in:
chgl
2023-06-25 23:59:09 +02:00
committed by GitHub
parent a06c0b9ce4
commit fdcd021e66
11 changed files with 51 additions and 46 deletions
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8
charts/hapi-fhir-jpaserver/Chart.lock
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@@ -1,6 +1,6 @@
dependencies:
- name: postgresql
repository: https://charts.bitnami.com/bitnami
version: 12.1.2
digest: sha256:525689611a29f90b0bc8cd674df5d97024c99eda8104216390f6747904fd0208
generated: "2022-11-21T22:55:45.1699395+01:00"
repository: oci://registry-1.docker.io/bitnamicharts
version: 12.5.6
digest: sha256:4d21dbc02bbdb55b957b0093e37376853727de82396abfadfaf1d738bd51b8e6
generated: "2023-06-03T20:58:45.922102213+02:00"

14
charts/hapi-fhir-jpaserver/Chart.yaml
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@@ -7,17 +7,19 @@ sources:
- https://github.com/hapifhir/hapi-fhir-jpaserver-starter
dependencies:
- name: postgresql
version: 12.1.2
repository: https://charts.bitnami.com/bitnami
version: 12.5.6
repository: oci://registry-1.docker.io/bitnamicharts
condition: postgresql.enabled
appVersion: 6.2.2
version: 0.11.1
appVersion: 6.6.0
version: 0.12.0
annotations:
artifacthub.io/license: Apache-2.0
artifacthub.io/changes: |
# When using the list of objects option the valid supported kinds are
# added, changed, deprecated, removed, fixed, and security.
- kind: changed
description: updated HAPI FHIR JPA Server app image version to v6.2.2
description: updated HAPI FHIR JPA Server app image version to v6.6.0
- kind: changed
description: updated curl used by helm tests to version to v7.87.0
description: updated curl used by helm tests to version to v8.1.1
- kind: changed
description: updated postgresql sub-chart to v12.5.6

13
charts/hapi-fhir-jpaserver/README.md
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@@ -1,6 +1,6 @@
# HAPI FHIR JPA Server Starter Helm Chart
![Version: 0.11.1](https://img.shields.io/badge/Version-0.11.1-informational?style=flat-square) ![Type: application](https://img.shields.io/badge/Type-application-informational?style=flat-square) ![AppVersion: 6.2.2](https://img.shields.io/badge/AppVersion-6.2.2-informational?style=flat-square)
![Version: 0.12.0](https://img.shields.io/badge/Version-0.12.0-informational?style=flat-square) ![Type: application](https://img.shields.io/badge/Type-application-informational?style=flat-square) ![AppVersion: 6.6.0](https://img.shields.io/badge/AppVersion-6.6.0-informational?style=flat-square)
This helm chart will help you install the HAPI FHIR JPA Server in a Kubernetes environment.
@@ -8,11 +8,14 @@ This helm chart will help you install the HAPI FHIR JPA Server in a Kubernetes e
```sh
helm repo add hapifhir https://hapifhir.github.io/hapi-fhir-jpaserver-starter/
helm install --render-subchart-notes hapi-fhir-jpaserver hapifhir/hapi-fhir-jpaserver
helm install hapi-fhir-jpaserver hapifhir/hapi-fhir-jpaserver
```
> ⚠ By default, the included [PostgreSQL Helm chart](https://github.com/bitnami/charts/tree/master/bitnami/postgresql#upgrading)
> auto-generates a random password for the database which may cause problems when upgrading the chart (see [here for details](https://github.com/bitnami/charts/tree/master/bitnami/postgresql#upgrading)).
## Requirements
| Repository | Name | Version |
|------------|------|---------|
| oci://registry-1.docker.io/bitnamicharts | postgresql | 12.5.6 |
## Values
@@ -32,7 +35,7 @@ helm install --render-subchart-notes hapi-fhir-jpaserver hapifhir/hapi-fhir-jpas
| image.pullPolicy | string | `"IfNotPresent"` | image pullPolicy to use |
| image.registry | string | `"docker.io"` | registry where the HAPI FHIR server image is hosted |
| image.repository | string | `"hapiproject/hapi"` | the path inside the repository |
| image.tag | string | `"v6.2.2@sha256:9c4e8af94d81ac0049dbb589e4cd855bf78c9c13be6f6844e814c63d63545b44"` | the image tag. As of v5.7.0, this is the `distroless` flavor by default, add `-tomcat` to use the Tomcat-based image. |
| image.tag | string | `"v6.6.0@sha256:c00367865ae5dad4e171cbb68bfc1c39818854079d1565bee4c86a45e78335d0"` | the image tag. As of v5.7.0, this is the `distroless` flavor by default, add `-tomcat` to use the Tomcat-based image. |
| imagePullSecrets | list | `[]` | image pull secrets to use when pulling the image |
| ingress.annotations | object | `{}` | provide any additional annotations which may be required. Evaluated as a template. |
| ingress.enabled | bool | `false` | whether to create an Ingress to expose the FHIR server HTTP endpoint |

5
charts/hapi-fhir-jpaserver/README.md.gotmpl
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@@ -8,11 +8,10 @@ This helm chart will help you install the HAPI FHIR JPA Server in a Kubernetes e
```sh
helm repo add hapifhir https://hapifhir.github.io/hapi-fhir-jpaserver-starter/
helm install --render-subchart-notes hapi-fhir-jpaserver hapifhir/hapi-fhir-jpaserver
helm install hapi-fhir-jpaserver hapifhir/hapi-fhir-jpaserver
```
> ⚠ By default, the included [PostgreSQL Helm chart](https://github.com/bitnami/charts/tree/master/bitnami/postgresql#upgrading)
> auto-generates a random password for the database which may cause problems when upgrading the chart (see [here for details](https://github.com/bitnami/charts/tree/master/bitnami/postgresql#upgrading)).
{{ template "chart.requirementsSection" . }}
{{ template "chart.valuesSection" . }}

2
charts/hapi-fhir-jpaserver/templates/deployment.yaml
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@@ -30,7 +30,7 @@ spec:
{{- toYaml .Values.podSecurityContext | nindent 8 }}
initContainers:
- name: wait-for-db-to-be-ready
image: docker.io/bitnami/postgresql:15.1.0-debian-11-r0@sha256:27915588d5203a10a1c23624d9c81644437f33b7c224e25f79bcd9bd09bbb8e2
image: docker.io/bitnami/postgresql:15.3.0-debian-11-r7@sha256:cc301eef743685f4f69d1d719853988e8a9650c90fd9521f4742ce400b3fdf6a
imagePullPolicy: IfNotPresent
{{- with .Values.restrictedContainerSecurityContext }}
securityContext:

6
charts/hapi-fhir-jpaserver/templates/tests/test-endpoints.yaml
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@@ -11,7 +11,7 @@ spec:
restartPolicy: Never
containers:
- name: test-metadata-endpoint
image: docker.io/curlimages/curl:7.87.0@sha256:f7f265d5c64eb4463a43a99b6bf773f9e61a50aaa7cefaf564f43e42549a01dd
image: docker.io/curlimages/curl:8.1.2@sha256:ef501f5efa67be41da985b441bd63130ef39d4d6a4f9c035d737884357438b6c
command: ["curl", "--fail-with-body"]
args: ["http://{{ include "hapi-fhir-jpaserver.fullname" . }}:{{ .Values.service.port }}/fhir/metadata?_summary=true"]
{{- with .Values.restrictedContainerSecurityContext }}
@@ -32,7 +32,7 @@ spec:
exec:
command: ["true"]
- name: test-patient-endpoint
image: docker.io/curlimages/curl:7.87.0@sha256:f7f265d5c64eb4463a43a99b6bf773f9e61a50aaa7cefaf564f43e42549a01dd
image: docker.io/curlimages/curl:8.1.2@sha256:ef501f5efa67be41da985b441bd63130ef39d4d6a4f9c035d737884357438b6c
command: ["curl", "--fail-with-body"]
args: ["http://{{ include "hapi-fhir-jpaserver.fullname" . }}:{{ .Values.service.port }}/fhir/Patient?_count=1&_summary=true"]
{{- with .Values.restrictedContainerSecurityContext }}
@@ -53,7 +53,7 @@ spec:
exec:
command: ["true"]
- name: test-metrics-endpoint
image: docker.io/curlimages/curl:7.87.0@sha256:f7f265d5c64eb4463a43a99b6bf773f9e61a50aaa7cefaf564f43e42549a01dd
image: docker.io/curlimages/curl:8.1.2@sha256:ef501f5efa67be41da985b441bd63130ef39d4d6a4f9c035d737884357438b6c
command: ["curl", "--fail-with-body"]
args: ["http://{{ include "hapi-fhir-jpaserver.fullname" . }}:{{ .Values.metrics.service.port }}/actuator/prometheus"]
{{- with .Values.restrictedContainerSecurityContext }}

2
charts/hapi-fhir-jpaserver/values.yaml
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@@ -7,7 +7,7 @@ image:
# -- the path inside the repository
repository: hapiproject/hapi
# -- the image tag. As of v5.7.0, this is the `distroless` flavor by default, add `-tomcat` to use the Tomcat-based image.
tag: "v6.2.2@sha256:9c4e8af94d81ac0049dbb589e4cd855bf78c9c13be6f6844e814c63d63545b44"
tag: "v6.6.0@sha256:c00367865ae5dad4e171cbb68bfc1c39818854079d1565bee4c86a45e78335d0"
# -- image pullPolicy to use
pullPolicy: IfNotPresent