Commit Graph

975 Commits

Author SHA1 Message Date
Kevin Dougan
43890a4b9d Removed explicit inclusion of snakeyaml and allow spring-boot-starter-actuator to pull it in as a needed dependency. 2023-04-07 10:40:42 +02:00
Bert Roos
600f3fe692 Update docker-compose sample with small application.properties
When running from Docker Hub, it is not convenient to have to copy the full application.yaml as a starting point. Based on Spring's property initialization order, it's possible to mount a small version of application.yaml in the config folder in the run directory.
2023-03-30 10:23:41 +02:00
Craig McClendon
c83e324692 configuration option to not reload IG resources that are already loaded 2023-03-30 10:19:45 +02:00
Kevin Dougan SmileCDR
cb4f560413 Merge pull request #505 from psavva/patch-4
Spelling error in Application.yaml
2023-03-01 08:43:57 -05:00
Panayiotis Savva
236c1e82ba Spelling error in Application.yaml
Fix spelling error in comments section
2023-03-01 14:04:42 +02:00
Tadgh
9cabe35c40 Merge pull request #498 from hapifhir/rel_6_4
Bump HAPI to 6.4.0
2023-02-17 10:56:27 -08:00
dotasek
20ed5d90ab Revert "Add optional explicit ip config for smoke tests"
This reverts commit afcd2fc131.
2023-02-14 15:15:44 -05:00
dotasek
afcd2fc131 Add optional explicit ip config for smoke tests 2023-02-14 14:52:26 -05:00
dotasek
9d126a4f56 Fix Application error regarding multiple beans 2023-02-14 14:52:03 -05:00
dotasek
19988c505d Bump Hapi 2023-02-14 12:47:32 -05:00
Juvar Abrera
35d09cce16 docs: Revert dislaimer in postgres 2023-02-11 14:06:33 +01:00
Juvar Abrera
7f7ea920d0 docs: Explicitly set hibernate.search.enabled to false if database is postgress in docker-compose instructions 2023-02-11 14:06:33 +01:00
Juvar Abrera
74be713515 refactor: Separate unrelated settings and documentation 2023-02-11 14:06:33 +01:00
Juvar Abrera
b6c1b9f47c docs: Explicitly set hibnerate.search.enabled to false if database is postgresql 2023-02-11 14:06:33 +01:00
Juvar Abrera
c88d26d2e5 docs: Fix postgresql typo in docker-compose 2023-02-11 14:06:33 +01:00
James Agnew
7dd1619369 Merge pull request #495 from XcrigX/remove-mysql-dependency
removed mysql-connector-java dependency since no longer supported and…
2023-02-09 09:51:08 -05:00
Craig McClendon
c9bc40c10a removed mysql-connector-java dependency since no longer supported and due to CVE-2022-3171 in transitive dependency on protobuf-java-3.19.4 2023-02-08 16:46:15 -06:00
James Agnew
9847d82257 Merge pull request #491 from juvarabrera/update-readme
docs: Updated README.md. Discontinue mysql
2023-02-04 15:04:18 -05:00
Juvar Abrera
3f66973952 docs: Updated README.md. Discontinue mysql 2023-02-04 21:20:37 +08:00
James Agnew
64b497e4e9 HAPI FHIR bump 2023-01-26 21:44:06 +01:00
Panayiotis Savva
e905da7733 CQL to CR 2023-01-26 21:44:06 +01:00
Panayiotis Savva
99ea176a9c typo 2023-01-26 21:44:06 +01:00
Panayiotis Savva
c7ee984b30 Allow Enabling IPS via config 2023-01-26 21:44:06 +01:00
Panayiotis Savva
7c89addbef Initial IPS + Cql to Cr migration 2023-01-26 21:44:06 +01:00
Mark Iantorno
c7962b6979 Merge pull request #482 from hapifhir/ld-20230110-hapi-fhir-6-3-6-snapshot-with-logs-working-downgrade-logback-solution
Upgrade to hapi-fhir 6.3.6-SNAPSHOT:  Alternative solution.
2023-01-13 13:28:05 -05:00
Luke deGruchy
5b4294421b Merge remote-tracking branch 'origin/master' into ld-20230110-hapi-fhir-6-3-6-snapshot-with-logs-working-downgrade-logback-solution 2023-01-12 09:27:05 -05:00
Mark Iantorno
cd6a8761bb Merge pull request #483 from hapifhir/ld-20230111-pipeline-maven-verify
Update pipeline to run integration tests.
2023-01-12 09:25:09 -05:00
Luke deGruchy
8f528dbddb Update pipeline to run integration tests. 2023-01-11 17:09:38 -05:00
James Agnew
ea3d858563 Fix tests for websocket 2023-01-11 16:30:12 -05:00
Luke deGruchy
38ed00a84b Implement a new solution: Instead of static code blocks disabling logging, rollback slf4j-api, logback-classic, and logback-core to older versions. It's the addition of the rollback for slf4j-api that seems to restore logging. 2023-01-10 16:53:57 -05:00
Luke deGruchy
d9f5e5c7da Merge remote-tracking branch 'origin/master' into ld-20230110-hapi-fhir-6-3-6-snapshot-with-logs-working 2023-01-10 14:53:11 -05:00
chgl
ef8c487da4 Updated Helm chart to use hapi fhir image 6.2.2 (#472) 2023-01-10 20:52:16 +01:00
Jens Kristian Villadsen
07d9a193d2 Feature/index default (#475)
* Added default

* Refactored the default resolution
2023-01-10 20:51:47 +01:00
Luke deGruchy
76650df4dc First commit to restore hapi-fhir 6.3.6-SNAPSHOT changes. Add static code blocks to Application.java as well as all tests to System.setProperty("org.springframework.boot.logging.LoggingSystem", "none"); 2023-01-10 14:51:32 -05:00
Luke deGruchy
f3493c7026 Restore rolled back changes to ExampleServerR4BIT that pass unnecessary properties that will cause problems when using hapi-fhir 6.3.6-SNAPSHOT. (#479) 2023-01-10 20:51:31 +01:00
Luke deGruchy
0c7e48cb4d Revert "Update pom.xml to reference hapi-fhir 6.3.6-SNAPSHOT. This hapi-fhir release contains a fix for POSTing an XML resource with comments results in a fhir_comments error (#465)" (#476)
This reverts commit 9a513cd184.
2023-01-10 20:14:52 +01:00
Kevin Dougan SmileCDR
f8c69bf3e1 Merge pull request #474 from inspector-cochise/junit-dep-remove
Remove old junit4 usage.
2023-01-10 08:18:51 -05:00
isims
d903ab9661 Remove old junit4 usage. 2023-01-10 11:21:21 +01:00
Jens Kristian Villadsen
96ff27f173 Feature/static files (#456)
* Added mapping

* Added documentation
2023-01-05 23:26:09 +01:00
Luke deGruchy
9a513cd184 Update pom.xml to reference hapi-fhir 6.3.6-SNAPSHOT. This hapi-fhir release contains a fix for POSTing an XML resource with comments results in a fhir_comments error (#465)
* Update pom.xml to reference hapi-fhir 6.3.4-SNAPSHOT.  This also involves renaming websocket dependencies whose names have changed since 6.2.2 (ex websocket-api to websocket-jetty-api).

* Update pom to reference logback 1.2.10 explicitly to resolve the missing StaticLoggerBinder errors.

* Fix logback issue by pulling the same logback version as hapi-fhir and setting the following system property at boot: org.springframework.boot.logging.LoggingSystem=none.   Also, fix the hapi-fhir-jpaserver-base dependency error by setting this in application.yaml: allow-bean-definition-overriding: true

* Set allow-bean-definition-overriding: true on test application.yaml as well.

* Remove lines in ExampleServerR4BIT that causes an implementation guide version error.

* Upgrade to 6.3.6-SNAPSHOT and once again disable allow-bean-definition-overriding.  Also remove the Bean for IMdmLinkDoa from StartJpaConfig and the Bean for ITermCodeSystemStorageSvc in FhirServerConfigDstu2.

* Explicitly use logback 1.2.10 for both logback-classic and logback-core to resolve StaticBinderLogger not found errors.  Also, remove explici logger disabling code in Application.java.

* Restore Application.java as well as both application.yaml files to the same as master.
2023-01-05 22:56:01 +01:00
James Agnew
1943589682 Merge pull request #467 from XcrigX/feature/interceptor-discovery
allow interceptors to be registered via properties
2022-12-21 09:27:51 -05:00
Craig McClendon
ba58a71624 allow interceptors to be registered via properties 2022-12-20 20:07:18 -06:00
Jens Kristian Villadsen
19c68e7cfc Bumped version (#462) 2022-12-03 14:43:37 +01:00
chgl
05d76c78ad Updated Helm chart to use image 6.2.1 and latest PostgreSQL (#458) 2022-11-24 23:09:24 +01:00
Mark Iantorno
daea3916ca Merge pull request #457 from hapifhir/update_HAPI_version
upping hapi version to 6.2.1
2022-11-17 11:12:19 -05:00
markiantorno
4fb2558d7c upping hapi version to 6.2.1 2022-11-17 10:07:25 -05:00
Jens Kristian Villadsen
2e1f5f5276 fixes for support of R4B / 6.2.0 (#455) 2022-11-12 18:39:38 +01:00
Kai-W
64aeb9b2fe Added hibernate.dialect for Postgress to Readme (#451) 2022-11-12 16:43:56 +01:00
jmarchionatto
f8d749ae28 Tracking Hapi 6.2-PRE releases (#408)
* Tracking branch for 6.1 pre-releases.

* Update to 6.1.0-PRE3-SNAPSHOT

* Adjust for hapi-fhir namespace changes and version

* Adjust version to include new hapi-fhir HSearch fast path feature

* Bump hapi PRE

* Update to PRE16

* Adjust configuration class name to HAPI-FHIR HSearch namespace consolidation.
Add commented out sample properties for lucene and elastic.
Move batch.job.enabled property under spring: prefix to have it considered.

* Adjust enumeration renaming

* Repoint FHIR 6.2.0-PRE1-SNAPSHOT

* Add missing Bean to starter configuration

* Update to hapi-fhir 6.2.0-PRE2-SNAPSHOT

* Update application-integrationtest.yaml and rename it as application.yaml to make test configuration independent of prod.

* Update to hapi-fhir 6.2.0-PRE5-SNAPSHOT

* Update dep

* Bump version fix failures

* Remove dead import

* Fix up

* remove batch refs

Co-authored-by: Michael Buckley <michael.buckley@smilecdr.com>
Co-authored-by: michaelabuckley <michaelabuckley@gmail.com>
Co-authored-by: juan.marchionatto <juan.marchionatto@smilecdr.com>
Co-authored-by: Tadgh <garygrantgraham@gmail.com>
2022-11-12 14:16:38 +01:00
Jens Kristian Villadsen
a1e2ca3ae1 revering to H2 (#449) 2022-10-27 08:21:08 +02:00