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Author SHA1 Message Date
Jens Kristian Villadsen
a1bdba5890 Update pom.xml 2023-04-07 10:45:04 +02:00
Jens Kristian Villadsen
c73c580823 Update pom.xml 
Update to 6.4.1
 2023-04-07 10:45:04 +02:00
Bert Roos
7e0fb80dac Simplify using an interceptor with Docker 
Now it is possible to mount a folder with extra classes that are loaded
by HAPI. This makes it easy to load an interceptor JAR while using the
standard Docker image. The README explains how to use it.

Spring by default uses the WarLauncher. Now the ENTRYPOINT uses the
PropertiesLauncher, configured in such a way that it is compatible with
the WarLauncher, but adding the folder /app/extra-classes to the
loader.path.
 2023-04-07 10:44:35 +02:00
Kevin Dougan
43890a4b9d Removed explicit inclusion of snakeyaml and allow spring-boot-starter-actuator to pull it in as a needed dependency. 2023-04-07 10:40:42 +02:00
Bert Roos
600f3fe692 Update docker-compose sample with small application.properties 
When running from Docker Hub, it is not convenient to have to copy the full application.yaml as a starting point. Based on Spring's property initialization order, it's possible to mount a small version of application.yaml in the config folder in the run directory.
 2023-03-30 10:23:41 +02:00
Craig McClendon
c83e324692 configuration option to not reload IG resources that are already loaded 2023-03-30 10:19:45 +02:00
Kevin Dougan SmileCDR
cb4f560413 Merge pull request #505 from psavva/patch-4 
Spelling error in Application.yaml
 2023-03-01 08:43:57 -05:00
Panayiotis Savva
236c1e82ba Spelling error in Application.yaml 
Fix spelling error in comments section
 2023-03-01 14:04:42 +02:00
Tadgh
9cabe35c40 Merge pull request #498 from hapifhir/rel_6_4 
Bump HAPI to 6.4.0
 2023-02-17 10:56:27 -08:00
dotasek
20ed5d90ab Revert "Add optional explicit ip config for smoke tests" 
This reverts commit afcd2fc131.
 2023-02-14 15:15:44 -05:00
dotasek
afcd2fc131 Add optional explicit ip config for smoke tests 2023-02-14 14:52:26 -05:00
dotasek
9d126a4f56 Fix Application error regarding multiple beans 2023-02-14 14:52:03 -05:00
dotasek
19988c505d Bump Hapi 2023-02-14 12:47:32 -05:00
Juvar Abrera
35d09cce16 docs: Revert dislaimer in postgres 2023-02-11 14:06:33 +01:00
Juvar Abrera
7f7ea920d0 docs: Explicitly set hibernate.search.enabled to false if database is postgress in docker-compose instructions 2023-02-11 14:06:33 +01:00
Juvar Abrera
74be713515 refactor: Separate unrelated settings and documentation 2023-02-11 14:06:33 +01:00
Juvar Abrera
b6c1b9f47c docs: Explicitly set hibnerate.search.enabled to false if database is postgresql 2023-02-11 14:06:33 +01:00
Juvar Abrera
c88d26d2e5 docs: Fix postgresql typo in docker-compose 2023-02-11 14:06:33 +01:00
James Agnew
7dd1619369 Merge pull request #495 from XcrigX/remove-mysql-dependency 
removed mysql-connector-java dependency since no longer supported and…
 2023-02-09 09:51:08 -05:00
Craig McClendon
c9bc40c10a removed mysql-connector-java dependency since no longer supported and due to CVE-2022-3171 in transitive dependency on protobuf-java-3.19.4 2023-02-08 16:46:15 -06:00
James Agnew
9847d82257 Merge pull request #491 from juvarabrera/update-readme 
docs: Updated README.md. Discontinue mysql
 2023-02-04 15:04:18 -05:00
Juvar Abrera
3f66973952 docs: Updated README.md. Discontinue mysql 2023-02-04 21:20:37 +08:00
James Agnew
64b497e4e9 HAPI FHIR bump 2023-01-26 21:44:06 +01:00
Panayiotis Savva
e905da7733 CQL to CR 2023-01-26 21:44:06 +01:00
Panayiotis Savva
99ea176a9c typo 2023-01-26 21:44:06 +01:00
Panayiotis Savva
c7ee984b30 Allow Enabling IPS via config 2023-01-26 21:44:06 +01:00
Panayiotis Savva
7c89addbef Initial IPS + Cql to Cr migration 2023-01-26 21:44:06 +01:00
Mark Iantorno
c7962b6979 Merge pull request #482 from hapifhir/ld-20230110-hapi-fhir-6-3-6-snapshot-with-logs-working-downgrade-logback-solution 
Upgrade to hapi-fhir 6.3.6-SNAPSHOT:  Alternative solution.
 2023-01-13 13:28:05 -05:00
Luke deGruchy
5b4294421b Merge remote-tracking branch 'origin/master' into ld-20230110-hapi-fhir-6-3-6-snapshot-with-logs-working-downgrade-logback-solution 2023-01-12 09:27:05 -05:00
Mark Iantorno
cd6a8761bb Merge pull request #483 from hapifhir/ld-20230111-pipeline-maven-verify 
Update pipeline to run integration tests.
 2023-01-12 09:25:09 -05:00
Luke deGruchy
8f528dbddb Update pipeline to run integration tests. 2023-01-11 17:09:38 -05:00
James Agnew
ea3d858563 Fix tests for websocket 2023-01-11 16:30:12 -05:00
Luke deGruchy
38ed00a84b Implement a new solution: Instead of static code blocks disabling logging, rollback slf4j-api, logback-classic, and logback-core to older versions. It's the addition of the rollback for slf4j-api that seems to restore logging. 2023-01-10 16:53:57 -05:00
Luke deGruchy
d9f5e5c7da Merge remote-tracking branch 'origin/master' into ld-20230110-hapi-fhir-6-3-6-snapshot-with-logs-working 2023-01-10 14:53:11 -05:00
chgl
ef8c487da4 Updated Helm chart to use hapi fhir image 6.2.2 (#472) 2023-01-10 20:52:16 +01:00
Jens Kristian Villadsen
07d9a193d2 Feature/index default (#475) 
* Added default

* Refactored the default resolution
 2023-01-10 20:51:47 +01:00
Luke deGruchy
76650df4dc First commit to restore hapi-fhir 6.3.6-SNAPSHOT changes. Add static code blocks to Application.java as well as all tests to System.setProperty("org.springframework.boot.logging.LoggingSystem", "none"); 2023-01-10 14:51:32 -05:00
Luke deGruchy
f3493c7026 Restore rolled back changes to ExampleServerR4BIT that pass unnecessary properties that will cause problems when using hapi-fhir 6.3.6-SNAPSHOT. (#479) 2023-01-10 20:51:31 +01:00
Luke deGruchy
0c7e48cb4d Revert "Update pom.xml to reference hapi-fhir 6.3.6-SNAPSHOT. This hapi-fhir release contains a fix for POSTing an XML resource with comments results in a fhir_comments error (#465)" (#476) 
This reverts commit 9a513cd184.
 2023-01-10 20:14:52 +01:00
Kevin Dougan SmileCDR
f8c69bf3e1 Merge pull request #474 from inspector-cochise/junit-dep-remove 
Remove old junit4 usage.
 2023-01-10 08:18:51 -05:00
isims
d903ab9661 Remove old junit4 usage. 2023-01-10 11:21:21 +01:00
Jens Kristian Villadsen
96ff27f173 Feature/static files (#456) 
* Added mapping

* Added documentation
 2023-01-05 23:26:09 +01:00
Luke deGruchy
9a513cd184 Update pom.xml to reference hapi-fhir 6.3.6-SNAPSHOT. This hapi-fhir release contains a fix for POSTing an XML resource with comments results in a fhir_comments error (#465) 
* Update pom.xml to reference hapi-fhir 6.3.4-SNAPSHOT.  This also involves renaming websocket dependencies whose names have changed since 6.2.2 (ex websocket-api to websocket-jetty-api).

* Update pom to reference logback 1.2.10 explicitly to resolve the missing StaticLoggerBinder errors.

* Fix logback issue by pulling the same logback version as hapi-fhir and setting the following system property at boot: org.springframework.boot.logging.LoggingSystem=none.   Also, fix the hapi-fhir-jpaserver-base dependency error by setting this in application.yaml: allow-bean-definition-overriding: true

* Set allow-bean-definition-overriding: true on test application.yaml as well.

* Remove lines in ExampleServerR4BIT that causes an implementation guide version error.

* Upgrade to 6.3.6-SNAPSHOT and once again disable allow-bean-definition-overriding.  Also remove the Bean for IMdmLinkDoa from StartJpaConfig and the Bean for ITermCodeSystemStorageSvc in FhirServerConfigDstu2.

* Explicitly use logback 1.2.10 for both logback-classic and logback-core to resolve StaticBinderLogger not found errors.  Also, remove explici logger disabling code in Application.java.

* Restore Application.java as well as both application.yaml files to the same as master.
 2023-01-05 22:56:01 +01:00
James Agnew
1943589682 Merge pull request #467 from XcrigX/feature/interceptor-discovery 
allow interceptors to be registered via properties
 2022-12-21 09:27:51 -05:00
Craig McClendon
ba58a71624 allow interceptors to be registered via properties 2022-12-20 20:07:18 -06:00
Jens Kristian Villadsen
19c68e7cfc Bumped version (#462) 2022-12-03 14:43:37 +01:00
chgl
05d76c78ad Updated Helm chart to use image 6.2.1 and latest PostgreSQL (#458) 2022-11-24 23:09:24 +01:00
Mark Iantorno
daea3916ca Merge pull request #457 from hapifhir/update_HAPI_version 
upping hapi version to 6.2.1
 2022-11-17 11:12:19 -05:00
markiantorno
4fb2558d7c upping hapi version to 6.2.1 2022-11-17 10:07:25 -05:00
Jens Kristian Villadsen
2e1f5f5276 fixes for support of R4B / 6.2.0 (#455) 2022-11-12 18:39:38 +01:00