Commit Graph

216 Commits

Author SHA1 Message Date
Matteo Steccolini
bf683478bc fix for tests not working
added required jetty dependencies through spring-boot-starter-jetty so this is the only dependency with scope=testing and transitive dependencies (core jetty libraries) aren't marked as such

mvn -P jetty spring-boot:run seems to work
2023-12-22 11:49:14 +01:00
Matteo Steccolini
36598c2e7e created a separated tomcat profile to run spring-boot with default server 2023-12-21 16:52:16 +01:00
Matteo Steccolini
a2a7e7681a fix test/compile/runtime dependencies of jetty to get spring-boot runnability with jetty and tomcat, tests, and deployment as web application 2023-12-21 16:32:12 +01:00
James Agnew
55e06699de Merge branch 'master' into ja_20231203_hapi_7_0 2023-12-15 09:42:24 -05:00
James Agnew
b746573253 Enable subscriptions and upgrade to jetty 12 2023-12-15 08:56:17 -05:00
Jens Kristian Villadsen
9c557e2c80 Cleaned up for running boot as default (#620) 2023-12-05 19:56:31 +01:00
James Agnew
0133663fbc Update to HAPI FHIR 7.0.0 Draft 2023-12-03 14:23:05 -05:00
Justin McKelvy
aaa8a1f8cc Merge branch 'master' into cr-6.9.6-snapshot 2023-11-22 09:44:51 -07:00
Justin McKelvy
0cf1ec8a7e removed basecr config due to spring errors 2023-11-21 15:30:44 -07:00
Justin McKelvy
6d10c0bade add valueset cache and cache invalidation listeners 2023-10-11 15:16:17 -06:00
dotasek
252219d6c7 Bump HAPI version to 6.8.3 2023-10-11 13:31:01 -04:00
c-schuler
3a0b42b265 Fixed cds-services discovery response 2023-10-10 15:02:16 -06:00
Brenin Rhodes
3d51876a8d Update to 6.9.8 2023-09-28 20:15:28 -06:00
Justin McKelvy
66940645c2 update configs and hapi-version 2023-09-21 12:52:35 -06:00
Justin McKelvy
4ac5f03a0d merge master 2023-09-18 18:41:34 -06:00
Justin McKelvy
1bb6e9e610 updating to latest hapi, fixing cr tests 2023-09-18 16:53:32 -06:00
Thomas Papke
39fba77e11 #580 Build artifact contain certain unused (but declared) dependencies 2023-08-31 11:27:19 +02:00
dotasek
69ff8c4d06 Bump to HAPI 6.8.0 2023-08-17 09:54:46 -04:00
Tadgh
f7853f5e19 Fix up test 2023-08-10 09:30:01 -07:00
dotasek
e9f29af1aa Bump to hapi 6.8.0-SNAPSHOT 2023-07-31 14:34:47 -04:00
justin.mckelvy
8566f7f8ed updating to 6.7.14-snapshot 2023-07-17 11:07:32 -06:00
justin.mckelvy
f92c204118 update pom 2023-06-30 15:15:53 -06:00
justin.mckelvy
29580e5501 6.6.1 with clinical reasoning fixes 2023-06-26 16:37:13 -06:00
justin.mckelvy
51615ac005 remove unused imports 2023-06-08 07:46:14 -06:00
dotasek
53a958ac66 Bump HAPI to release 6.6.0 (#539)
* Start tracking 6.5

* Use JpaStorageSettings and StorageSettings

* Bump parent pom version + add deps for jaxb

* Bump HAPI

* Fix Subscription/Topic resource creation

* fix subscription topic beans

* Change to rel_6_6 hapi-fhir SNAPSHOT

* Fix emailSender config

* Split method calls by line.

* Merge pull request #524 from hapifhir/do-20230509-smoke-test-ci

Create smoke-tests.yml

* Bump core to release 6.6.0

---------

Co-authored-by: Michael Buckley <michaelabuckley@gmail.com>
Co-authored-by: Kevin Dougan SmileCDR <72025369+KevinDougan-SmileCDR@users.noreply.github.com>
Co-authored-by: Ken Stevens <ken@smilecdr.com>
Co-authored-by: Mark Iantorno <markiantorno@gmail.com>
2023-05-29 20:33:45 +02:00
Jens Kristian Villadsen
d96c90c18f Update pom.xml 2023-04-07 10:45:04 +02:00
Jens Kristian Villadsen
a1bdba5890 Update pom.xml 2023-04-07 10:45:04 +02:00
Jens Kristian Villadsen
c73c580823 Update pom.xml
Update to 6.4.1
2023-04-07 10:45:04 +02:00
Kevin Dougan
43890a4b9d Removed explicit inclusion of snakeyaml and allow spring-boot-starter-actuator to pull it in as a needed dependency. 2023-04-07 10:40:42 +02:00
dotasek
19988c505d Bump Hapi 2023-02-14 12:47:32 -05:00
Craig McClendon
c9bc40c10a removed mysql-connector-java dependency since no longer supported and due to CVE-2022-3171 in transitive dependency on protobuf-java-3.19.4 2023-02-08 16:46:15 -06:00
James Agnew
64b497e4e9 HAPI FHIR bump 2023-01-26 21:44:06 +01:00
Panayiotis Savva
7c89addbef Initial IPS + Cql to Cr migration 2023-01-26 21:44:06 +01:00
Luke deGruchy
38ed00a84b Implement a new solution: Instead of static code blocks disabling logging, rollback slf4j-api, logback-classic, and logback-core to older versions. It's the addition of the rollback for slf4j-api that seems to restore logging. 2023-01-10 16:53:57 -05:00
Luke deGruchy
76650df4dc First commit to restore hapi-fhir 6.3.6-SNAPSHOT changes. Add static code blocks to Application.java as well as all tests to System.setProperty("org.springframework.boot.logging.LoggingSystem", "none"); 2023-01-10 14:51:32 -05:00
Luke deGruchy
0c7e48cb4d Revert "Update pom.xml to reference hapi-fhir 6.3.6-SNAPSHOT. This hapi-fhir release contains a fix for POSTing an XML resource with comments results in a fhir_comments error (#465)" (#476)
This reverts commit 9a513cd184.
2023-01-10 20:14:52 +01:00
Luke deGruchy
9a513cd184 Update pom.xml to reference hapi-fhir 6.3.6-SNAPSHOT. This hapi-fhir release contains a fix for POSTing an XML resource with comments results in a fhir_comments error (#465)
* Update pom.xml to reference hapi-fhir 6.3.4-SNAPSHOT.  This also involves renaming websocket dependencies whose names have changed since 6.2.2 (ex websocket-api to websocket-jetty-api).

* Update pom to reference logback 1.2.10 explicitly to resolve the missing StaticLoggerBinder errors.

* Fix logback issue by pulling the same logback version as hapi-fhir and setting the following system property at boot: org.springframework.boot.logging.LoggingSystem=none.   Also, fix the hapi-fhir-jpaserver-base dependency error by setting this in application.yaml: allow-bean-definition-overriding: true

* Set allow-bean-definition-overriding: true on test application.yaml as well.

* Remove lines in ExampleServerR4BIT that causes an implementation guide version error.

* Upgrade to 6.3.6-SNAPSHOT and once again disable allow-bean-definition-overriding.  Also remove the Bean for IMdmLinkDoa from StartJpaConfig and the Bean for ITermCodeSystemStorageSvc in FhirServerConfigDstu2.

* Explicitly use logback 1.2.10 for both logback-classic and logback-core to resolve StaticBinderLogger not found errors.  Also, remove explici logger disabling code in Application.java.

* Restore Application.java as well as both application.yaml files to the same as master.
2023-01-05 22:56:01 +01:00
Jens Kristian Villadsen
19c68e7cfc Bumped version (#462) 2022-12-03 14:43:37 +01:00
markiantorno
4fb2558d7c upping hapi version to 6.2.1 2022-11-17 10:07:25 -05:00
Jens Kristian Villadsen
2e1f5f5276 fixes for support of R4B / 6.2.0 (#455) 2022-11-12 18:39:38 +01:00
jmarchionatto
f8d749ae28 Tracking Hapi 6.2-PRE releases (#408)
* Tracking branch for 6.1 pre-releases.

* Update to 6.1.0-PRE3-SNAPSHOT

* Adjust for hapi-fhir namespace changes and version

* Adjust version to include new hapi-fhir HSearch fast path feature

* Bump hapi PRE

* Update to PRE16

* Adjust configuration class name to HAPI-FHIR HSearch namespace consolidation.
Add commented out sample properties for lucene and elastic.
Move batch.job.enabled property under spring: prefix to have it considered.

* Adjust enumeration renaming

* Repoint FHIR 6.2.0-PRE1-SNAPSHOT

* Add missing Bean to starter configuration

* Update to hapi-fhir 6.2.0-PRE2-SNAPSHOT

* Update application-integrationtest.yaml and rename it as application.yaml to make test configuration independent of prod.

* Update to hapi-fhir 6.2.0-PRE5-SNAPSHOT

* Update dep

* Bump version fix failures

* Remove dead import

* Fix up

* remove batch refs

Co-authored-by: Michael Buckley <michael.buckley@smilecdr.com>
Co-authored-by: michaelabuckley <michaelabuckley@gmail.com>
Co-authored-by: juan.marchionatto <juan.marchionatto@smilecdr.com>
Co-authored-by: Tadgh <garygrantgraham@gmail.com>
2022-11-12 14:16:38 +01:00
dependabot[bot]
5c1f99bf18 Bump snakeyaml from 1.30 to 1.31
Bumps [snakeyaml](https://bitbucket.org/snakeyaml/snakeyaml) from 1.30 to 1.31.
- [Commits](https://bitbucket.org/snakeyaml/snakeyaml/branches/compare/snakeyaml-1.31..snakeyaml-1.30)

---
updated-dependencies:
- dependency-name: org.yaml:snakeyaml
  dependency-type: direct:production
...

Signed-off-by: dependabot[bot] <support@github.com>
2022-09-27 13:25:21 +00:00
chgl
d059954c5f Updated hapi-fhir to 6.1.0 2022-08-22 18:23:36 +02:00
markiantorno
6ad29890f0 changes to pom.xml to enable publishing 2022-07-05 14:27:05 -04:00
Patrick Werner
d6b5bc3cd2 Applying fix from upstream for h2 Binaries
This issue is already fixed upstream. Can be removed with next hapi version upgrade.
https://github.com/hapifhir/hapi-fhir/pull/3676
2022-07-04 14:46:15 +02:00
Mark Iantorno
73d7ee1857 bumping to non-snapshot version (#377) 2022-05-26 21:00:07 +02:00
Tadgh
6ad499cecb Bump to pre-01 2022-05-19 14:45:42 -07:00
Tadgh
2a71578516 Merge branch 'master' into rel_6_0_0_mergeback 2022-05-19 10:43:51 -07:00
Tadgh
cd0b8d7392 Bump pom and minimum java version 2022-05-16 09:57:30 -07:00
chgl
fdfa6fd711 Expose Prometheus metrics (#355) 2022-05-01 21:48:18 +02:00