Commit Graph

484 Commits

Author SHA1 Message Date
Panayiotis Savva
99ea176a9c typo 2023-01-26 21:44:06 +01:00
Panayiotis Savva
c7ee984b30 Allow Enabling IPS via config 2023-01-26 21:44:06 +01:00
Panayiotis Savva
7c89addbef Initial IPS + Cql to Cr migration 2023-01-26 21:44:06 +01:00
Luke deGruchy
38ed00a84b Implement a new solution: Instead of static code blocks disabling logging, rollback slf4j-api, logback-classic, and logback-core to older versions. It's the addition of the rollback for slf4j-api that seems to restore logging. 2023-01-10 16:53:57 -05:00
Luke deGruchy
d9f5e5c7da Merge remote-tracking branch 'origin/master' into ld-20230110-hapi-fhir-6-3-6-snapshot-with-logs-working 2023-01-10 14:53:11 -05:00
Jens Kristian Villadsen
07d9a193d2 Feature/index default (#475)
* Added default

* Refactored the default resolution
2023-01-10 20:51:47 +01:00
Luke deGruchy
76650df4dc First commit to restore hapi-fhir 6.3.6-SNAPSHOT changes. Add static code blocks to Application.java as well as all tests to System.setProperty("org.springframework.boot.logging.LoggingSystem", "none"); 2023-01-10 14:51:32 -05:00
Luke deGruchy
0c7e48cb4d Revert "Update pom.xml to reference hapi-fhir 6.3.6-SNAPSHOT. This hapi-fhir release contains a fix for POSTing an XML resource with comments results in a fhir_comments error (#465)" (#476)
This reverts commit 9a513cd184.
2023-01-10 20:14:52 +01:00
Jens Kristian Villadsen
96ff27f173 Feature/static files (#456)
* Added mapping

* Added documentation
2023-01-05 23:26:09 +01:00
Luke deGruchy
9a513cd184 Update pom.xml to reference hapi-fhir 6.3.6-SNAPSHOT. This hapi-fhir release contains a fix for POSTing an XML resource with comments results in a fhir_comments error (#465)
* Update pom.xml to reference hapi-fhir 6.3.4-SNAPSHOT.  This also involves renaming websocket dependencies whose names have changed since 6.2.2 (ex websocket-api to websocket-jetty-api).

* Update pom to reference logback 1.2.10 explicitly to resolve the missing StaticLoggerBinder errors.

* Fix logback issue by pulling the same logback version as hapi-fhir and setting the following system property at boot: org.springframework.boot.logging.LoggingSystem=none.   Also, fix the hapi-fhir-jpaserver-base dependency error by setting this in application.yaml: allow-bean-definition-overriding: true

* Set allow-bean-definition-overriding: true on test application.yaml as well.

* Remove lines in ExampleServerR4BIT that causes an implementation guide version error.

* Upgrade to 6.3.6-SNAPSHOT and once again disable allow-bean-definition-overriding.  Also remove the Bean for IMdmLinkDoa from StartJpaConfig and the Bean for ITermCodeSystemStorageSvc in FhirServerConfigDstu2.

* Explicitly use logback 1.2.10 for both logback-classic and logback-core to resolve StaticBinderLogger not found errors.  Also, remove explici logger disabling code in Application.java.

* Restore Application.java as well as both application.yaml files to the same as master.
2023-01-05 22:56:01 +01:00
Craig McClendon
ba58a71624 allow interceptors to be registered via properties 2022-12-20 20:07:18 -06:00
Jens Kristian Villadsen
2e1f5f5276 fixes for support of R4B / 6.2.0 (#455) 2022-11-12 18:39:38 +01:00
jmarchionatto
f8d749ae28 Tracking Hapi 6.2-PRE releases (#408)
* Tracking branch for 6.1 pre-releases.

* Update to 6.1.0-PRE3-SNAPSHOT

* Adjust for hapi-fhir namespace changes and version

* Adjust version to include new hapi-fhir HSearch fast path feature

* Bump hapi PRE

* Update to PRE16

* Adjust configuration class name to HAPI-FHIR HSearch namespace consolidation.
Add commented out sample properties for lucene and elastic.
Move batch.job.enabled property under spring: prefix to have it considered.

* Adjust enumeration renaming

* Repoint FHIR 6.2.0-PRE1-SNAPSHOT

* Add missing Bean to starter configuration

* Update to hapi-fhir 6.2.0-PRE2-SNAPSHOT

* Update application-integrationtest.yaml and rename it as application.yaml to make test configuration independent of prod.

* Update to hapi-fhir 6.2.0-PRE5-SNAPSHOT

* Update dep

* Bump version fix failures

* Remove dead import

* Fix up

* remove batch refs

Co-authored-by: Michael Buckley <michael.buckley@smilecdr.com>
Co-authored-by: michaelabuckley <michaelabuckley@gmail.com>
Co-authored-by: juan.marchionatto <juan.marchionatto@smilecdr.com>
Co-authored-by: Tadgh <garygrantgraham@gmail.com>
2022-11-12 14:16:38 +01:00
Jens Kristian Villadsen
a1e2ca3ae1 revering to H2 (#449) 2022-10-27 08:21:08 +02:00
rti
d61c8a5f96 switch to postgres db (#444) 2022-10-11 20:02:45 +02:00
patrick-werner
a95c40dd05 fixed SubscriptionDebugLogInterceptor adding logic 2022-10-11 20:00:58 +02:00
Patrick Werner
7a72c86a63 removed duplicated and wrong subscription code (#440) 2022-10-06 14:26:43 +02:00
Thomas Papke
531d255782 Proper close DB connection after dialect was resolved (#435) 2022-10-01 17:19:01 +02:00
Jens Kristian Villadsen
3d03cd00c5 fix: configuration of cors
Refs: #430
2022-09-28 22:51:57 +02:00
Patrick Werner
38f37e4db0 added back lost config entry: allowed_bundle_types (#427)
* added back lost config entry

* disabled entry
2022-09-15 13:10:22 +02:00
Jens Kristian Villadsen
43d50a0c71 Extract IG loading (#426) 2022-09-13 18:54:14 +02:00
Jens Kristian Villadsen
d660d5f76d Feat/restructuring (#422)
* Did restructuring and made repo validation interceptor an optional bean instead as it makes it more clean

* Moved construction of FHIR servlet into a bean for better reuse of others that would like to depend directly on this library

* Disabled default validation enabled
2022-09-10 21:14:01 +02:00
Patrick Werner
c5e460dab0 added appProperties.getInline_resource_storage_below_size() (#420)
* added appProperties.getInline_resource_storage_below_size()

* indentations
2022-09-03 20:04:59 +02:00
chgl
d059954c5f Updated hapi-fhir to 6.1.0 2022-08-22 18:23:36 +02:00
Arbaaz Muslim
c617f4e395 bulk data instrumentation turned off by default 2022-08-09 16:48:22 -07:00
Arbaaz Muslim
d148f458e0 bulk data instrumentation included 2022-08-09 16:31:49 -07:00
Patrick Werner
bea4d471aa removed wrong and duplicated config entry
`daoconfig_client_id_strategy`does not resolve and is a duplicate of `client_id_strategy`
2022-07-04 14:54:49 +02:00
Ibrohim Kholilul Islam
a026b1f390 Update src/main/java/ca/uhn/fhir/jpa/starter/BaseJpaRestfulServer.java
Co-authored-by: Kevin Dougan SmileCDR <72025369+KevinDougan-SmileCDR@users.noreply.github.com>
2022-06-23 12:00:55 +07:00
Ibrohim Kholilul Islam
41ba07a5e5 add BinaryAccessProvider to BaseJpaRestfulServer 2022-06-17 18:15:58 +00:00
Tadgh
d660dc1370 Re-add valueset operation provider 2022-05-21 10:31:49 -07:00
Tadgh
f39393ca97 Disable lucene by default 2022-05-21 10:10:20 -07:00
Tadgh
4dacf6ae90 Re-add valuesetoperation provider 2022-05-21 09:54:50 -07:00
Ken Stevens
e5b0fc7216 fix build 2022-05-20 15:24:17 -04:00
Tadgh
af842619b0 Fix reindex provider 2022-05-19 12:59:22 -07:00
Tadgh
5942823f17 Remove value set provider as it causes a boot failure without lucene 2022-05-19 11:56:14 -07:00
Tadgh
2a71578516 Merge branch 'master' into rel_6_0_0_mergeback 2022-05-19 10:43:51 -07:00
Dennis Verspuij
244113ba67 Fix applying supported_resource_types option with list that already includes SearchParameter (#365) 2022-05-09 21:39:56 +02:00
Alejandro Medina
91e4105fd8 Add: of-type modifier option in application.yaml (#363)
Co-authored-by: Alejandro Medina <amedina@cens.cl>
2022-05-06 18:25:51 +02:00
chgl
fdfa6fd711 Expose Prometheus metrics (#355) 2022-05-01 21:48:18 +02:00
Patrick Werner
c8da589636 Add disclaimer for advanced_lucene_indexing
added warning to     advanced_lucene_indexing: false property
2022-04-20 18:31:37 +02:00
Michael Buckley
f1e18d200a Revert accidental default activation of experimental lucene indexing 2022-04-20 12:23:10 -04:00
Patrick Werner
21165ccfaa Merge pull request #337 from hapifhir/feature/spring-boot-actuator
Add actuator
2022-04-13 13:52:06 +02:00
Jens Kristian Villadsen
bf51c2263a Update application.yaml
Reverted to sane defaults
2022-04-11 20:00:06 +02:00
Jens Kristian Villadsen
6b3f57cf12 Update application.yaml (#345) 2022-04-07 22:32:38 +02:00
Jaison Baskaran
49401c0d3d Bump to PRE9 2022-03-29 15:16:08 -06:00
craig mcclendon
da319e8761 disable springboot actuator endpoints other than 'health' for security reasons (#338)
Co-authored-by: Craig McClendon <craig.mcclendon@accenture.com>
2022-03-23 20:12:48 +01:00
jkv
aeef4b176c Add actuator 2022-03-20 21:22:36 +01:00
Jens Kristian Villadsen
929a3535fa Update application.yaml
Roll back - mistake from my side
2022-03-08 10:44:13 +01:00
Jens Kristian Villadsen
0483db9195 Update application.yaml 2022-03-08 10:42:52 +01:00
Patrick Werner
40d7b9ce27 added reindexProvider to Config (#326) 2022-03-07 13:20:06 +01:00