Commit Graph

186 Commits

Author SHA1 Message Date
Craig McClendon
c9bc40c10a removed mysql-connector-java dependency since no longer supported and due to CVE-2022-3171 in transitive dependency on protobuf-java-3.19.4 2023-02-08 16:46:15 -06:00
James Agnew
64b497e4e9 HAPI FHIR bump 2023-01-26 21:44:06 +01:00
Panayiotis Savva
7c89addbef Initial IPS + Cql to Cr migration 2023-01-26 21:44:06 +01:00
Luke deGruchy
38ed00a84b Implement a new solution: Instead of static code blocks disabling logging, rollback slf4j-api, logback-classic, and logback-core to older versions. It's the addition of the rollback for slf4j-api that seems to restore logging. 2023-01-10 16:53:57 -05:00
Luke deGruchy
76650df4dc First commit to restore hapi-fhir 6.3.6-SNAPSHOT changes. Add static code blocks to Application.java as well as all tests to System.setProperty("org.springframework.boot.logging.LoggingSystem", "none"); 2023-01-10 14:51:32 -05:00
Luke deGruchy
0c7e48cb4d Revert "Update pom.xml to reference hapi-fhir 6.3.6-SNAPSHOT. This hapi-fhir release contains a fix for POSTing an XML resource with comments results in a fhir_comments error (#465)" (#476)
This reverts commit 9a513cd184.
2023-01-10 20:14:52 +01:00
Luke deGruchy
9a513cd184 Update pom.xml to reference hapi-fhir 6.3.6-SNAPSHOT. This hapi-fhir release contains a fix for POSTing an XML resource with comments results in a fhir_comments error (#465)
* Update pom.xml to reference hapi-fhir 6.3.4-SNAPSHOT.  This also involves renaming websocket dependencies whose names have changed since 6.2.2 (ex websocket-api to websocket-jetty-api).

* Update pom to reference logback 1.2.10 explicitly to resolve the missing StaticLoggerBinder errors.

* Fix logback issue by pulling the same logback version as hapi-fhir and setting the following system property at boot: org.springframework.boot.logging.LoggingSystem=none.   Also, fix the hapi-fhir-jpaserver-base dependency error by setting this in application.yaml: allow-bean-definition-overriding: true

* Set allow-bean-definition-overriding: true on test application.yaml as well.

* Remove lines in ExampleServerR4BIT that causes an implementation guide version error.

* Upgrade to 6.3.6-SNAPSHOT and once again disable allow-bean-definition-overriding.  Also remove the Bean for IMdmLinkDoa from StartJpaConfig and the Bean for ITermCodeSystemStorageSvc in FhirServerConfigDstu2.

* Explicitly use logback 1.2.10 for both logback-classic and logback-core to resolve StaticBinderLogger not found errors.  Also, remove explici logger disabling code in Application.java.

* Restore Application.java as well as both application.yaml files to the same as master.
2023-01-05 22:56:01 +01:00
Jens Kristian Villadsen
19c68e7cfc Bumped version (#462) 2022-12-03 14:43:37 +01:00
markiantorno
4fb2558d7c upping hapi version to 6.2.1 2022-11-17 10:07:25 -05:00
Jens Kristian Villadsen
2e1f5f5276 fixes for support of R4B / 6.2.0 (#455) 2022-11-12 18:39:38 +01:00
jmarchionatto
f8d749ae28 Tracking Hapi 6.2-PRE releases (#408)
* Tracking branch for 6.1 pre-releases.

* Update to 6.1.0-PRE3-SNAPSHOT

* Adjust for hapi-fhir namespace changes and version

* Adjust version to include new hapi-fhir HSearch fast path feature

* Bump hapi PRE

* Update to PRE16

* Adjust configuration class name to HAPI-FHIR HSearch namespace consolidation.
Add commented out sample properties for lucene and elastic.
Move batch.job.enabled property under spring: prefix to have it considered.

* Adjust enumeration renaming

* Repoint FHIR 6.2.0-PRE1-SNAPSHOT

* Add missing Bean to starter configuration

* Update to hapi-fhir 6.2.0-PRE2-SNAPSHOT

* Update application-integrationtest.yaml and rename it as application.yaml to make test configuration independent of prod.

* Update to hapi-fhir 6.2.0-PRE5-SNAPSHOT

* Update dep

* Bump version fix failures

* Remove dead import

* Fix up

* remove batch refs

Co-authored-by: Michael Buckley <michael.buckley@smilecdr.com>
Co-authored-by: michaelabuckley <michaelabuckley@gmail.com>
Co-authored-by: juan.marchionatto <juan.marchionatto@smilecdr.com>
Co-authored-by: Tadgh <garygrantgraham@gmail.com>
2022-11-12 14:16:38 +01:00
dependabot[bot]
5c1f99bf18 Bump snakeyaml from 1.30 to 1.31
Bumps [snakeyaml](https://bitbucket.org/snakeyaml/snakeyaml) from 1.30 to 1.31.
- [Commits](https://bitbucket.org/snakeyaml/snakeyaml/branches/compare/snakeyaml-1.31..snakeyaml-1.30)

---
updated-dependencies:
- dependency-name: org.yaml:snakeyaml
  dependency-type: direct:production
...

Signed-off-by: dependabot[bot] <support@github.com>
2022-09-27 13:25:21 +00:00
chgl
d059954c5f Updated hapi-fhir to 6.1.0 2022-08-22 18:23:36 +02:00
markiantorno
6ad29890f0 changes to pom.xml to enable publishing 2022-07-05 14:27:05 -04:00
Patrick Werner
d6b5bc3cd2 Applying fix from upstream for h2 Binaries
This issue is already fixed upstream. Can be removed with next hapi version upgrade.
https://github.com/hapifhir/hapi-fhir/pull/3676
2022-07-04 14:46:15 +02:00
Mark Iantorno
73d7ee1857 bumping to non-snapshot version (#377) 2022-05-26 21:00:07 +02:00
Tadgh
6ad499cecb Bump to pre-01 2022-05-19 14:45:42 -07:00
Tadgh
2a71578516 Merge branch 'master' into rel_6_0_0_mergeback 2022-05-19 10:43:51 -07:00
Tadgh
cd0b8d7392 Bump pom and minimum java version 2022-05-16 09:57:30 -07:00
chgl
fdfa6fd711 Expose Prometheus metrics (#355) 2022-05-01 21:48:18 +02:00
Michael Buckley
f736b6d8e6 Bump to hapi PRE11 2022-04-29 08:57:37 -04:00
chgl
c607a98728 Updated to HAPI FHIR version 5.7.2 (#349) 2022-04-15 19:28:53 +02:00
Jaison Baskaran
ae724f4172 Bump to PRE10 2022-04-13 08:54:11 -06:00
Patrick Werner
21165ccfaa Merge pull request #337 from hapifhir/feature/spring-boot-actuator
Add actuator
2022-04-13 13:52:06 +02:00
craig mcclendon
cdda71b253 add support for ms sql server (#347) 2022-04-09 19:19:44 +02:00
Jaison Baskaran
49401c0d3d Bump to PRE9 2022-03-29 15:16:08 -06:00
Michael Buckley
403b87573d Bump to PRE8 2022-03-23 10:34:42 -04:00
jkv
aeef4b176c Add actuator 2022-03-20 21:22:36 +01:00
Jaison Baskaran
146b9f68ac Bump hapi-fhir version to 'PRE5' (#329) 2022-03-09 09:03:10 -07:00
Tadgh
94f47f4736 Bump version 2022-02-21 16:13:35 -08:00
Jens Kristian Villadsen
e45ba6ce5b Version bump to 5.7.0 and a few other components now draw the version from parent 2022-02-17 23:12:10 +01:00
dependabot[bot]
4952c00df7 Bump postgresql from 42.2.23 to 42.2.25
Bumps [postgresql](https://github.com/pgjdbc/pgjdbc) from 42.2.23 to 42.2.25.
- [Release notes](https://github.com/pgjdbc/pgjdbc/releases)
- [Changelog](https://github.com/pgjdbc/pgjdbc/blob/master/CHANGELOG.md)
- [Commits](https://github.com/pgjdbc/pgjdbc/compare/REL42.2.23...REL42.2.25)

---
updated-dependencies:
- dependency-name: org.postgresql:postgresql
  dependency-type: direct:production
...

Signed-off-by: dependabot[bot] <support@github.com>
2022-02-02 00:59:55 +00:00
jkv
abf21f824c Merge commit '528d2bc087ae2f5bf49b2fb38d17dba134feda63'
# Conflicts:
#	src/main/java/ca/uhn/fhir/jpa/starter/FhirServerConfigDstu3.java
#	src/main/java/ca/uhn/fhir/jpa/starter/FhirServerConfigR4.java
#	src/main/java/ca/uhn/fhir/jpa/starter/FhirServerConfigR5.java
#	src/main/resources/application.yaml

Preparing for 5.7.0
2022-01-29 20:29:14 +01:00
Michael Buckley
42e3e78bbc Bump to 5.7.0-PRE8-SNAPSHOT 2021-12-17 18:05:49 -05:00
Michael Buckley
8c6a1a713e Upgrade to 5.7.0-PRE4-SNAPSHOT for testing 2021-12-09 14:54:20 -05:00
Michael Buckley
2512616951 Merge branch 'master' into nih-testing
* master:
  Update application.yaml
  Bumped version of Spring Boot in order to fix same issue as https://github.com/Haulmont/jmix-security/issues/90
  Upgraded to 5.6.0 Subscription tests fail ...
  Added OpenAPI / Swagger option
  simplified helm chart
  build ARM-compatible images
  bumped dependencies to latest
  only push build images to DockerHub
  Adds ability to change HAPI FHIR JPA server's port with the environment variable server.port
  Adds ability to control the number of executor threads through environment variables server.tomcat.max-threads and server.tomcat.min-spare-threads.  There is not a breaking change and does not affect the function of the JPA server unless these environment variables are set.
  Adds ability to use delete-expunge operations to the JPA Starter Server.

# Conflicts:
#	pom.xml
#	src/main/java/ca/uhn/fhir/jpa/starter/AppProperties.java
#	src/main/java/ca/uhn/fhir/jpa/starter/Application.java
#	src/main/java/ca/uhn/fhir/jpa/starter/EnvironmentHelper.java
#	src/main/java/ca/uhn/fhir/jpa/starter/FhirServerConfigCommon.java
#	src/main/java/ca/uhn/fhir/jpa/starter/FhirServerConfigDstu2.java
#	src/main/java/ca/uhn/fhir/jpa/starter/FhirServerConfigDstu3.java
#	src/main/java/ca/uhn/fhir/jpa/starter/FhirServerConfigR4.java
#	src/main/java/ca/uhn/fhir/jpa/starter/FhirServerConfigR5.java
2021-12-09 14:53:03 -05:00
jkv
96450874af Bumped version of Spring Boot in order to fix same issue as https://github.com/Haulmont/jmix-security/issues/90 2021-11-18 20:17:30 +01:00
jkv
16559ea17c Upgraded to 5.6.0
Subscription tests fail ...
2021-11-18 19:48:40 +01:00
jkv
ea3f10ec86 Added OpenAPI / Swagger option 2021-11-10 20:57:31 +01:00
Michael Buckley
ac75421a7b Update to 5.6.0-PRE7_NIH-SNAPSHOT and activate advanced index 2021-10-05 15:07:08 -04:00
chgl
73d01ab408 bumped dependencies to latest 2021-10-05 09:35:06 +02:00
Tadgh
370d68a55c Bump for new version 2021-09-16 01:00:35 -04:00
Tadgh
6e2836b91d Bump version 2021-09-07 18:36:58 -04:00
Tadgh
6e876c1502 WIP 2021-08-27 16:29:06 -04:00
Tadgh
5038b5bd2c Remove javamail and replace with simple-java-mail 2021-08-27 13:50:42 -04:00
Tadgh
395a87ee84 Bump dep version 2021-08-27 13:34:47 -04:00
jvi
4025295261 Bumped version to 5.5.0 - still gotta talk with the SmileCDR folks 2021-08-25 16:55:18 +02:00
Jens Kristian Villadsen
83908242a5 Update pom.xml
Version bumps
2021-07-16 13:48:06 +02:00
jkv
16f5f13ce1 Version bump of spring boot 2021-06-27 20:32:31 +02:00
jvi
1d82c9cd40 Added option for installing transitive IG's - default is true 2021-06-24 11:14:30 +02:00