Commit Graph

230 Commits

Author SHA1 Message Date
Jens Kristian Villadsen
afaec85653 Addressing https://github.com/hapifhir/hapi-fhir-jpaserver-starter/issues/486 and https://github.com/hapifhir/hapi-fhir-jpaserver-starter/issues/485 2023-06-09 11:39:54 +02:00
dotasek
53a958ac66 Bump HAPI to release 6.6.0 (#539)
* Start tracking 6.5

* Use JpaStorageSettings and StorageSettings

* Bump parent pom version + add deps for jaxb

* Bump HAPI

* Fix Subscription/Topic resource creation

* fix subscription topic beans

* Change to rel_6_6 hapi-fhir SNAPSHOT

* Fix emailSender config

* Split method calls by line.

* Merge pull request #524 from hapifhir/do-20230509-smoke-test-ci

Create smoke-tests.yml

* Bump core to release 6.6.0

---------

Co-authored-by: Michael Buckley <michaelabuckley@gmail.com>
Co-authored-by: Kevin Dougan SmileCDR <72025369+KevinDougan-SmileCDR@users.noreply.github.com>
Co-authored-by: Ken Stevens <ken@smilecdr.com>
Co-authored-by: Mark Iantorno <markiantorno@gmail.com>
2023-05-29 20:33:45 +02:00
Kevin Dougan
75e0e68104 497 - Fix typo on property setter. 2023-05-05 10:49:13 -04:00
Craig McClendon
c83e324692 configuration option to not reload IG resources that are already loaded 2023-03-30 10:19:45 +02:00
dotasek
9d126a4f56 Fix Application error regarding multiple beans 2023-02-14 14:52:03 -05:00
James Agnew
64b497e4e9 HAPI FHIR bump 2023-01-26 21:44:06 +01:00
Panayiotis Savva
99ea176a9c typo 2023-01-26 21:44:06 +01:00
Panayiotis Savva
c7ee984b30 Allow Enabling IPS via config 2023-01-26 21:44:06 +01:00
Panayiotis Savva
7c89addbef Initial IPS + Cql to Cr migration 2023-01-26 21:44:06 +01:00
Luke deGruchy
38ed00a84b Implement a new solution: Instead of static code blocks disabling logging, rollback slf4j-api, logback-classic, and logback-core to older versions. It's the addition of the rollback for slf4j-api that seems to restore logging. 2023-01-10 16:53:57 -05:00
Luke deGruchy
d9f5e5c7da Merge remote-tracking branch 'origin/master' into ld-20230110-hapi-fhir-6-3-6-snapshot-with-logs-working 2023-01-10 14:53:11 -05:00
Jens Kristian Villadsen
07d9a193d2 Feature/index default (#475)
* Added default

* Refactored the default resolution
2023-01-10 20:51:47 +01:00
Luke deGruchy
76650df4dc First commit to restore hapi-fhir 6.3.6-SNAPSHOT changes. Add static code blocks to Application.java as well as all tests to System.setProperty("org.springframework.boot.logging.LoggingSystem", "none"); 2023-01-10 14:51:32 -05:00
Luke deGruchy
0c7e48cb4d Revert "Update pom.xml to reference hapi-fhir 6.3.6-SNAPSHOT. This hapi-fhir release contains a fix for POSTing an XML resource with comments results in a fhir_comments error (#465)" (#476)
This reverts commit 9a513cd184.
2023-01-10 20:14:52 +01:00
Jens Kristian Villadsen
96ff27f173 Feature/static files (#456)
* Added mapping

* Added documentation
2023-01-05 23:26:09 +01:00
Luke deGruchy
9a513cd184 Update pom.xml to reference hapi-fhir 6.3.6-SNAPSHOT. This hapi-fhir release contains a fix for POSTing an XML resource with comments results in a fhir_comments error (#465)
* Update pom.xml to reference hapi-fhir 6.3.4-SNAPSHOT.  This also involves renaming websocket dependencies whose names have changed since 6.2.2 (ex websocket-api to websocket-jetty-api).

* Update pom to reference logback 1.2.10 explicitly to resolve the missing StaticLoggerBinder errors.

* Fix logback issue by pulling the same logback version as hapi-fhir and setting the following system property at boot: org.springframework.boot.logging.LoggingSystem=none.   Also, fix the hapi-fhir-jpaserver-base dependency error by setting this in application.yaml: allow-bean-definition-overriding: true

* Set allow-bean-definition-overriding: true on test application.yaml as well.

* Remove lines in ExampleServerR4BIT that causes an implementation guide version error.

* Upgrade to 6.3.6-SNAPSHOT and once again disable allow-bean-definition-overriding.  Also remove the Bean for IMdmLinkDoa from StartJpaConfig and the Bean for ITermCodeSystemStorageSvc in FhirServerConfigDstu2.

* Explicitly use logback 1.2.10 for both logback-classic and logback-core to resolve StaticBinderLogger not found errors.  Also, remove explici logger disabling code in Application.java.

* Restore Application.java as well as both application.yaml files to the same as master.
2023-01-05 22:56:01 +01:00
Craig McClendon
ba58a71624 allow interceptors to be registered via properties 2022-12-20 20:07:18 -06:00
Jens Kristian Villadsen
2e1f5f5276 fixes for support of R4B / 6.2.0 (#455) 2022-11-12 18:39:38 +01:00
jmarchionatto
f8d749ae28 Tracking Hapi 6.2-PRE releases (#408)
* Tracking branch for 6.1 pre-releases.

* Update to 6.1.0-PRE3-SNAPSHOT

* Adjust for hapi-fhir namespace changes and version

* Adjust version to include new hapi-fhir HSearch fast path feature

* Bump hapi PRE

* Update to PRE16

* Adjust configuration class name to HAPI-FHIR HSearch namespace consolidation.
Add commented out sample properties for lucene and elastic.
Move batch.job.enabled property under spring: prefix to have it considered.

* Adjust enumeration renaming

* Repoint FHIR 6.2.0-PRE1-SNAPSHOT

* Add missing Bean to starter configuration

* Update to hapi-fhir 6.2.0-PRE2-SNAPSHOT

* Update application-integrationtest.yaml and rename it as application.yaml to make test configuration independent of prod.

* Update to hapi-fhir 6.2.0-PRE5-SNAPSHOT

* Update dep

* Bump version fix failures

* Remove dead import

* Fix up

* remove batch refs

Co-authored-by: Michael Buckley <michael.buckley@smilecdr.com>
Co-authored-by: michaelabuckley <michaelabuckley@gmail.com>
Co-authored-by: juan.marchionatto <juan.marchionatto@smilecdr.com>
Co-authored-by: Tadgh <garygrantgraham@gmail.com>
2022-11-12 14:16:38 +01:00
patrick-werner
a95c40dd05 fixed SubscriptionDebugLogInterceptor adding logic 2022-10-11 20:00:58 +02:00
Patrick Werner
7a72c86a63 removed duplicated and wrong subscription code (#440) 2022-10-06 14:26:43 +02:00
Thomas Papke
531d255782 Proper close DB connection after dialect was resolved (#435) 2022-10-01 17:19:01 +02:00
Jens Kristian Villadsen
3d03cd00c5 fix: configuration of cors
Refs: #430
2022-09-28 22:51:57 +02:00
Jens Kristian Villadsen
43d50a0c71 Extract IG loading (#426) 2022-09-13 18:54:14 +02:00
Jens Kristian Villadsen
d660d5f76d Feat/restructuring (#422)
* Did restructuring and made repo validation interceptor an optional bean instead as it makes it more clean

* Moved construction of FHIR servlet into a bean for better reuse of others that would like to depend directly on this library

* Disabled default validation enabled
2022-09-10 21:14:01 +02:00
Patrick Werner
c5e460dab0 added appProperties.getInline_resource_storage_below_size() (#420)
* added appProperties.getInline_resource_storage_below_size()

* indentations
2022-09-03 20:04:59 +02:00
chgl
d059954c5f Updated hapi-fhir to 6.1.0 2022-08-22 18:23:36 +02:00
Arbaaz Muslim
d148f458e0 bulk data instrumentation included 2022-08-09 16:31:49 -07:00
Ibrohim Kholilul Islam
a026b1f390 Update src/main/java/ca/uhn/fhir/jpa/starter/BaseJpaRestfulServer.java
Co-authored-by: Kevin Dougan SmileCDR <72025369+KevinDougan-SmileCDR@users.noreply.github.com>
2022-06-23 12:00:55 +07:00
Ibrohim Kholilul Islam
41ba07a5e5 add BinaryAccessProvider to BaseJpaRestfulServer 2022-06-17 18:15:58 +00:00
Tadgh
d660dc1370 Re-add valueset operation provider 2022-05-21 10:31:49 -07:00
Tadgh
4dacf6ae90 Re-add valuesetoperation provider 2022-05-21 09:54:50 -07:00
Ken Stevens
e5b0fc7216 fix build 2022-05-20 15:24:17 -04:00
Tadgh
af842619b0 Fix reindex provider 2022-05-19 12:59:22 -07:00
Tadgh
5942823f17 Remove value set provider as it causes a boot failure without lucene 2022-05-19 11:56:14 -07:00
Tadgh
2a71578516 Merge branch 'master' into rel_6_0_0_mergeback 2022-05-19 10:43:51 -07:00
Dennis Verspuij
244113ba67 Fix applying supported_resource_types option with list that already includes SearchParameter (#365) 2022-05-09 21:39:56 +02:00
Alejandro Medina
91e4105fd8 Add: of-type modifier option in application.yaml (#363)
Co-authored-by: Alejandro Medina <amedina@cens.cl>
2022-05-06 18:25:51 +02:00
Jaison Baskaran
49401c0d3d Bump to PRE9 2022-03-29 15:16:08 -06:00
Patrick Werner
40d7b9ce27 added reindexProvider to Config (#326) 2022-03-07 13:20:06 +01:00
Joel Schneider (NMDP)
7db15103fe add dao_scheduling_enabled configuration property (#324) 2022-03-04 11:38:16 +01:00
Michael Buckley
31ed166ab9 Merge branch 'nih-testing' into rel_6_0_0
* nih-testing:
 register the ValueSet provider.
2022-02-28 14:41:03 -05:00
Ken Stevens
810b090846 fix to work with latest hapi-fhir 2022-02-23 17:24:21 -05:00
Tadgh
f2ba86d7db Move to newlines 2022-02-23 09:29:22 -08:00
Tadgh
0e4926e59b Remove search coord thread pool 2022-02-21 16:24:08 -08:00
Tadgh
a6abfb9e24 Merge branch 'master' into rel_5_7 2022-02-17 17:52:36 -08:00
Michael Buckley
56f43324fd Bump to Hapi 6.0-SNAPSHOT and register the ValueSet provider. 2022-02-03 13:25:22 -05:00
jkv
abf21f824c Merge commit '528d2bc087ae2f5bf49b2fb38d17dba134feda63'
# Conflicts:
#	src/main/java/ca/uhn/fhir/jpa/starter/FhirServerConfigDstu3.java
#	src/main/java/ca/uhn/fhir/jpa/starter/FhirServerConfigR4.java
#	src/main/java/ca/uhn/fhir/jpa/starter/FhirServerConfigR5.java
#	src/main/resources/application.yaml

Preparing for 5.7.0
2022-01-29 20:29:14 +01:00
Tadgh
24ad4116f8 Fix h2 dialect, replace mail dep 2022-01-26 20:28:05 -08:00
Tadgh
bbd9428d6e Update for 5.7.x changes 2022-01-26 18:45:45 -08:00