Commit Graph

601 Commits

Author SHA1 Message Date
Mark Iantorno
c7962b6979 Merge pull request #482 from hapifhir/ld-20230110-hapi-fhir-6-3-6-snapshot-with-logs-working-downgrade-logback-solution
Upgrade to hapi-fhir 6.3.6-SNAPSHOT:  Alternative solution.
2023-01-13 13:28:05 -05:00
Luke deGruchy
5b4294421b Merge remote-tracking branch 'origin/master' into ld-20230110-hapi-fhir-6-3-6-snapshot-with-logs-working-downgrade-logback-solution 2023-01-12 09:27:05 -05:00
Mark Iantorno
cd6a8761bb Merge pull request #483 from hapifhir/ld-20230111-pipeline-maven-verify
Update pipeline to run integration tests.
2023-01-12 09:25:09 -05:00
Luke deGruchy
8f528dbddb Update pipeline to run integration tests. 2023-01-11 17:09:38 -05:00
James Agnew
ea3d858563 Fix tests for websocket 2023-01-11 16:30:12 -05:00
Luke deGruchy
38ed00a84b Implement a new solution: Instead of static code blocks disabling logging, rollback slf4j-api, logback-classic, and logback-core to older versions. It's the addition of the rollback for slf4j-api that seems to restore logging. 2023-01-10 16:53:57 -05:00
Luke deGruchy
d9f5e5c7da Merge remote-tracking branch 'origin/master' into ld-20230110-hapi-fhir-6-3-6-snapshot-with-logs-working 2023-01-10 14:53:11 -05:00
chgl
ef8c487da4 Updated Helm chart to use hapi fhir image 6.2.2 (#472) 2023-01-10 20:52:16 +01:00
Jens Kristian Villadsen
07d9a193d2 Feature/index default (#475)
* Added default

* Refactored the default resolution
2023-01-10 20:51:47 +01:00
Luke deGruchy
76650df4dc First commit to restore hapi-fhir 6.3.6-SNAPSHOT changes. Add static code blocks to Application.java as well as all tests to System.setProperty("org.springframework.boot.logging.LoggingSystem", "none"); 2023-01-10 14:51:32 -05:00
Luke deGruchy
f3493c7026 Restore rolled back changes to ExampleServerR4BIT that pass unnecessary properties that will cause problems when using hapi-fhir 6.3.6-SNAPSHOT. (#479) 2023-01-10 20:51:31 +01:00
Luke deGruchy
0c7e48cb4d Revert "Update pom.xml to reference hapi-fhir 6.3.6-SNAPSHOT. This hapi-fhir release contains a fix for POSTing an XML resource with comments results in a fhir_comments error (#465)" (#476)
This reverts commit 9a513cd184.
2023-01-10 20:14:52 +01:00
Kevin Dougan SmileCDR
f8c69bf3e1 Merge pull request #474 from inspector-cochise/junit-dep-remove
Remove old junit4 usage.
2023-01-10 08:18:51 -05:00
isims
d903ab9661 Remove old junit4 usage. 2023-01-10 11:21:21 +01:00
Jens Kristian Villadsen
96ff27f173 Feature/static files (#456)
* Added mapping

* Added documentation
2023-01-05 23:26:09 +01:00
Luke deGruchy
9a513cd184 Update pom.xml to reference hapi-fhir 6.3.6-SNAPSHOT. This hapi-fhir release contains a fix for POSTing an XML resource with comments results in a fhir_comments error (#465)
* Update pom.xml to reference hapi-fhir 6.3.4-SNAPSHOT.  This also involves renaming websocket dependencies whose names have changed since 6.2.2 (ex websocket-api to websocket-jetty-api).

* Update pom to reference logback 1.2.10 explicitly to resolve the missing StaticLoggerBinder errors.

* Fix logback issue by pulling the same logback version as hapi-fhir and setting the following system property at boot: org.springframework.boot.logging.LoggingSystem=none.   Also, fix the hapi-fhir-jpaserver-base dependency error by setting this in application.yaml: allow-bean-definition-overriding: true

* Set allow-bean-definition-overriding: true on test application.yaml as well.

* Remove lines in ExampleServerR4BIT that causes an implementation guide version error.

* Upgrade to 6.3.6-SNAPSHOT and once again disable allow-bean-definition-overriding.  Also remove the Bean for IMdmLinkDoa from StartJpaConfig and the Bean for ITermCodeSystemStorageSvc in FhirServerConfigDstu2.

* Explicitly use logback 1.2.10 for both logback-classic and logback-core to resolve StaticBinderLogger not found errors.  Also, remove explici logger disabling code in Application.java.

* Restore Application.java as well as both application.yaml files to the same as master.
2023-01-05 22:56:01 +01:00
James Agnew
1943589682 Merge pull request #467 from XcrigX/feature/interceptor-discovery
allow interceptors to be registered via properties
2022-12-21 09:27:51 -05:00
Craig McClendon
ba58a71624 allow interceptors to be registered via properties 2022-12-20 20:07:18 -06:00
Jens Kristian Villadsen
19c68e7cfc Bumped version (#462) 2022-12-03 14:43:37 +01:00
chgl
05d76c78ad Updated Helm chart to use image 6.2.1 and latest PostgreSQL (#458) 2022-11-24 23:09:24 +01:00
Mark Iantorno
daea3916ca Merge pull request #457 from hapifhir/update_HAPI_version
upping hapi version to 6.2.1
2022-11-17 11:12:19 -05:00
markiantorno
4fb2558d7c upping hapi version to 6.2.1 2022-11-17 10:07:25 -05:00
Jens Kristian Villadsen
2e1f5f5276 fixes for support of R4B / 6.2.0 (#455) 2022-11-12 18:39:38 +01:00
Kai-W
64aeb9b2fe Added hibernate.dialect for Postgress to Readme (#451) 2022-11-12 16:43:56 +01:00
jmarchionatto
f8d749ae28 Tracking Hapi 6.2-PRE releases (#408)
* Tracking branch for 6.1 pre-releases.

* Update to 6.1.0-PRE3-SNAPSHOT

* Adjust for hapi-fhir namespace changes and version

* Adjust version to include new hapi-fhir HSearch fast path feature

* Bump hapi PRE

* Update to PRE16

* Adjust configuration class name to HAPI-FHIR HSearch namespace consolidation.
Add commented out sample properties for lucene and elastic.
Move batch.job.enabled property under spring: prefix to have it considered.

* Adjust enumeration renaming

* Repoint FHIR 6.2.0-PRE1-SNAPSHOT

* Add missing Bean to starter configuration

* Update to hapi-fhir 6.2.0-PRE2-SNAPSHOT

* Update application-integrationtest.yaml and rename it as application.yaml to make test configuration independent of prod.

* Update to hapi-fhir 6.2.0-PRE5-SNAPSHOT

* Update dep

* Bump version fix failures

* Remove dead import

* Fix up

* remove batch refs

Co-authored-by: Michael Buckley <michael.buckley@smilecdr.com>
Co-authored-by: michaelabuckley <michaelabuckley@gmail.com>
Co-authored-by: juan.marchionatto <juan.marchionatto@smilecdr.com>
Co-authored-by: Tadgh <garygrantgraham@gmail.com>
2022-11-12 14:16:38 +01:00
Jens Kristian Villadsen
a1e2ca3ae1 revering to H2 (#449) 2022-10-27 08:21:08 +02:00
rti
d61c8a5f96 switch to postgres db (#444) 2022-10-11 20:02:45 +02:00
patrick-werner
a95c40dd05 fixed SubscriptionDebugLogInterceptor adding logic 2022-10-11 20:00:58 +02:00
Patrick Werner
7a72c86a63 removed duplicated and wrong subscription code (#440) 2022-10-06 14:26:43 +02:00
Thomas Papke
531d255782 Proper close DB connection after dialect was resolved (#435) 2022-10-01 17:19:01 +02:00
Kevin Dougan SmileCDR
f3b9ffed4d Merge pull request #434 from jkiddo/feat/fix-cors
fix: configuration of cors
2022-09-30 08:46:48 -04:00
Jens Kristian Villadsen
3d03cd00c5 fix: configuration of cors
Refs: #430
2022-09-28 22:51:57 +02:00
Kevin Dougan SmileCDR
cd1a2e1687 Merge pull request #432 from hapifhir/dependabot/maven/org.yaml-snakeyaml-1.31
Bump snakeyaml from 1.30 to 1.31
2022-09-27 09:54:09 -04:00
dependabot[bot]
5c1f99bf18 Bump snakeyaml from 1.30 to 1.31
Bumps [snakeyaml](https://bitbucket.org/snakeyaml/snakeyaml) from 1.30 to 1.31.
- [Commits](https://bitbucket.org/snakeyaml/snakeyaml/branches/compare/snakeyaml-1.31..snakeyaml-1.30)

---
updated-dependencies:
- dependency-name: org.yaml:snakeyaml
  dependency-type: direct:production
...

Signed-off-by: dependabot[bot] <support@github.com>
2022-09-27 13:25:21 +00:00
Patrick Werner
38f37e4db0 added back lost config entry: allowed_bundle_types (#427)
* added back lost config entry

* disabled entry
2022-09-15 13:10:22 +02:00
Jens Kristian Villadsen
43d50a0c71 Extract IG loading (#426) 2022-09-13 18:54:14 +02:00
Jens Kristian Villadsen
d660d5f76d Feat/restructuring (#422)
* Did restructuring and made repo validation interceptor an optional bean instead as it makes it more clean

* Moved construction of FHIR servlet into a bean for better reuse of others that would like to depend directly on this library

* Disabled default validation enabled
2022-09-10 21:14:01 +02:00
Patrick Werner
c5e460dab0 added appProperties.getInline_resource_storage_below_size() (#420)
* added appProperties.getInline_resource_storage_below_size()

* indentations
2022-09-03 20:04:59 +02:00
chgl
bdc621e535 updated helm chart to use version 6.1.0 of the image 2022-08-28 20:10:59 +02:00
chgl
4790c4372f Don't run maven CI on changes to the helm chart 2022-08-25 21:18:17 +02:00
chgl
68e64f2f33 Minor Helm chart dependency updates and security improvements 2022-08-25 21:18:17 +02:00
Mark Iantorno
001bc9c57a Merge pull request #415 from chgl/updated-to-hapi-6.1.0
Updated to hapi 6.1.0
2022-08-23 11:42:46 -04:00
Patrick Werner
ac5364c786 Merge pull request #413 from hapifhir/jkiddo-patch-1
Better support for ARM
2022-08-23 09:53:31 +02:00
chgl
d059954c5f Updated hapi-fhir to 6.1.0 2022-08-22 18:23:36 +02:00
chgl
956cfb171d Updated Otel Java agent to 1.17.0 2022-08-22 18:15:34 +02:00
Jens Kristian Villadsen
ee74116e6b Better support for ARM
java17 regular doesn't have ARM, java17-debian11 does
2022-08-18 21:05:36 +02:00
Kevin Dougan SmileCDR
4978f32e32 Merge pull request #411 from chgl/patch-1
updated opentelemetry-java-instrumentation JAR to 1.16.0
2022-08-15 07:57:39 -04:00
chgl
1753272122 updated opentelemetry-java-instrumentation JAR to 1.16.0 2022-08-15 01:20:49 +02:00
Kevin Dougan SmileCDR
427a1473e9 Merge pull request #410 from amuslim-fn/master
Inclusion of bulk data instrumentation
2022-08-10 13:35:47 -04:00
Arbaaz Muslim
c617f4e395 bulk data instrumentation turned off by default 2022-08-09 16:48:22 -07:00