hapi-fhir-jpaserver-starter/src/test/java/ca/uhn/fhir/jpa/starter/ElasticsearchLastNR4IT.java

package ca.uhn.fhir.jpa.starter;

import ca.uhn.fhir.context.ConfigurationException;
import ca.uhn.fhir.context.FhirContext;
import ca.uhn.fhir.jpa.search.lastn.ElasticsearchSvcImpl;
import ca.uhn.fhir.rest.client.api.IGenericClient;
import ca.uhn.fhir.rest.client.api.ServerValidationModeEnum;
import ca.uhn.fhir.rest.client.interceptor.LoggingInterceptor;
import org.hl7.fhir.instance.model.api.IIdType;
import org.hl7.fhir.r4.model.Bundle;
import org.hl7.fhir.r4.model.DateTimeType;
import org.hl7.fhir.r4.model.IntegerType;
import org.hl7.fhir.r4.model.Observation;
import org.hl7.fhir.r4.model.Parameters;
import org.hl7.fhir.r4.model.Patient;
import org.hl7.fhir.r4.model.StringType;
import org.junit.jupiter.api.BeforeAll;
import org.junit.jupiter.api.BeforeEach;
import org.junit.jupiter.api.Test;
import org.junit.jupiter.api.extension.ExtendWith;
import org.springframework.beans.factory.annotation.Autowired;
import org.springframework.boot.test.context.SpringBootTest;
import org.springframework.boot.test.util.TestPropertyValues;
import org.springframework.boot.web.server.LocalServerPort;
import org.springframework.context.ApplicationContextInitializer;
import org.springframework.context.ConfigurableApplicationContext;
import org.springframework.test.context.ContextConfiguration;
import org.springframework.test.context.junit.jupiter.SpringExtension;
import pl.allegro.tech.embeddedelasticsearch.EmbeddedElastic;
import pl.allegro.tech.embeddedelasticsearch.PopularProperties;

import javax.annotation.PreDestroy;
import java.io.IOException;
import java.util.Date;
import java.util.GregorianCalendar;
import java.util.UUID;
import java.util.concurrent.TimeUnit;

import static org.junit.jupiter.api.Assertions.assertEquals;

@ExtendWith(SpringExtension.class)
@SpringBootTest(webEnvironment = SpringBootTest.WebEnvironment.RANDOM_PORT, classes = Application.class, properties =
  {
    "spring.batch.job.enabled=false",
    "spring.datasource.url=jdbc:h2:mem:dbr4",
    "hapi.fhir.fhir_version=r4",
    "hapi.fhir.lastn_enabled=true",
    "elasticsearch.enabled=true",
    // Because the port is set randomly, we will set the rest_url using the Initializer.
    // "elasticsearch.rest_url='http://localhost:9200'",
    "elasticsearch.username=SomeUsername",
    "elasticsearch.password=SomePassword"
  })
@ContextConfiguration(initializers = ElasticsearchLastNR4IT.Initializer.class)
public class ElasticsearchLastNR4IT {

  private IGenericClient ourClient;
  private FhirContext ourCtx;

  private static final String ELASTIC_VERSION = "6.5.4";
  private static EmbeddedElastic embeddedElastic;

  @Autowired
  private ElasticsearchSvcImpl myElasticsearchSvc;

  @BeforeAll
  public static void beforeClass() {

    embeddedElastic = null;
    try {
      embeddedElastic = EmbeddedElastic.builder()
        .withElasticVersion(ELASTIC_VERSION)
        .withSetting(PopularProperties.TRANSPORT_TCP_PORT, 0)
        .withSetting(PopularProperties.HTTP_PORT, 0)
        .withSetting(PopularProperties.CLUSTER_NAME, UUID.randomUUID())
        .withStartTimeout(60, TimeUnit.SECONDS)
        .build()
        .start();
    } catch (IOException | InterruptedException e) {
      throw new ConfigurationException(e);
    }
  }

  @PreDestroy
  public void stop() {
    embeddedElastic.stop();
  }

  @LocalServerPort
  private int port;

  @Test
  void testLastN() throws IOException {

    Patient pt = new Patient();
    pt.addName().setFamily("Lastn").addGiven("Arthur");
    IIdType id = ourClient.create().resource(pt).execute().getId().toUnqualifiedVersionless();

    Observation obs = new Observation();
    obs.getSubject().setReferenceElement(id);
    String observationCode = "testobservationcode";
    String codeSystem = "http://testobservationcodesystem";
    obs.getCode().addCoding().setCode(observationCode).setSystem(codeSystem);
    obs.setValue(new StringType(observationCode));
    Date effectiveDtm = new GregorianCalendar().getTime();
    obs.setEffective(new DateTimeType(effectiveDtm));
    obs.getCategoryFirstRep().addCoding().setCode("testcategorycode").setSystem("http://testcategorycodesystem");
    IIdType obsId = ourClient.create().resource(obs).execute().getId().toUnqualifiedVersionless();

    myElasticsearchSvc.refreshIndex(ElasticsearchSvcImpl.OBSERVATION_INDEX);

    Parameters output = ourClient.operation().onType(Observation.class).named("lastn")
      .withParameter(Parameters.class, "max", new IntegerType(1))
      .andParameter("subject", new StringType("Patient/" + id.getIdPart()))
      .execute();
    Bundle b = (Bundle) output.getParameter().get(0).getResource();
    assertEquals(1, b.getTotal());
    assertEquals(obsId, b.getEntry().get(0).getResource().getIdElement().toUnqualifiedVersionless());
  }

  @BeforeEach
  void beforeEach() {

    ourCtx = FhirContext.forR4();
    ourCtx.getRestfulClientFactory().setServerValidationMode(ServerValidationModeEnum.NEVER);
    ourCtx.getRestfulClientFactory().setSocketTimeout(1200 * 1000);
    String ourServerBase = "http://localhost:" + port + "/fhir/";
    ourClient = ourCtx.newRestfulGenericClient(ourServerBase);
    ourClient.registerInterceptor(new LoggingInterceptor(true));
  }

  static class Initializer
    implements ApplicationContextInitializer<ConfigurableApplicationContext> {

    @Override
    public void initialize(
      ConfigurableApplicationContext configurableApplicationContext) {
      // Since the port is dynamically generated, replace the URL with one that has the correct port
      TestPropertyValues.of("elasticsearch.rest_url=http://localhost:" + embeddedElastic.getHttpPort())
        .applyTo(configurableApplicationContext.getEnvironment());
    }

  }
}