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Merge pull request #293 from chgl/updated-helm-chart

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updated helm chart to use image v5.6.0
This commit is contained in:
Jens Kristian Villadsen
2021-12-11 16:15:07 +01:00
committed by GitHub
parent 7ece4c3b4e 8ce44c2ae1
commit c89b0d40b7
7 changed files with 84 additions and 19 deletions
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5
.github/workflows/chart-release.yaml vendored
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@@ -21,11 +21,6 @@ jobs:
git config user.name "$GITHUB_ACTOR"
git config user.email "$GITHUB_ACTOR@users.noreply.github.com"
- name: Install Helm
uses: azure/setup-helm@v1
with:
version: v3.7.0
- name: Add bitnami repo
run: helm repo add bitnami https://charts.bitnami.com/bitnami

5
.github/workflows/chart-test.yaml vendored
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@@ -43,11 +43,6 @@ jobs:
with:
fetch-depth: 0
- name: Set up Helm
uses: azure/setup-helm@v1
with:
version: v3.7.0
- name: Set up chart-testing
uses: helm/chart-testing-action@v2.1.0

9
charts/hapi-fhir-jpaserver/Chart.yaml
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@@ -18,6 +18,9 @@ annotations:
# added, changed, deprecated, removed, fixed, and security.
- kind: changed
description: |
updated HAPI FHIR starter image to 5.5.1
appVersion: v5.5.1
version: 0.6.0
updated HAPI FHIR starter image to 5.6.0
- kind: added
description: |
added support for configuring PodDisruptionBudget for the server pods
appVersion: v5.6.0
version: 0.7.0

31
charts/hapi-fhir-jpaserver/README.md
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@@ -1,6 +1,6 @@
# HAPI FHIR JPA Server Starter Helm Chart
![Version: 0.6.0](https://img.shields.io/badge/Version-0.6.0-informational?style=flat-square) ![Type: application](https://img.shields.io/badge/Type-application-informational?style=flat-square) ![AppVersion: v5.5.1](https://img.shields.io/badge/AppVersion-v5.5.1-informational?style=flat-square)
![Version: 0.7.0](https://img.shields.io/badge/Version-0.7.0-informational?style=flat-square) ![Type: application](https://img.shields.io/badge/Type-application-informational?style=flat-square) ![AppVersion: v5.6.0](https://img.shields.io/badge/AppVersion-v5.6.0-informational?style=flat-square)
This helm chart will help you install the HAPI FHIR JPA Server in a Kubernetes environment.
@@ -11,6 +11,9 @@ helm repo add hapifhir https://hapifhir.github.io/hapi-fhir-jpaserver-starter/
helm install --render-subchart-notes hapi-fhir-jpaserver hapifhir/hapi-fhir-jpaserver
```
> ⚠ By default, the included [PostgreSQL Helm chart](https://github.com/bitnami/charts/tree/master/bitnami/postgresql#upgrading)
> auto-generates a random password for the database which may cause problems when upgrading the chart (see [here for details](https://github.com/bitnami/charts/tree/master/bitnami/postgresql#upgrading)).
## Values
| Key | Type | Default | Description |
@@ -24,11 +27,12 @@ helm install --render-subchart-notes hapi-fhir-jpaserver hapifhir/hapi-fhir-jpas
| externalDatabase.password | string | `""` | database password |
| externalDatabase.port | int | `5432` | database port number |
| externalDatabase.user | string | `"fhir"` | username for the external database |
| extraEnv | list | `[]` | extra environment variables to set on the server container |
| fullnameOverride | string | `""` | override the chart fullname |
| image.flavor | string | `"distroless"` | the flavor or variant of the image to use. appended to the image tag by `-`. |
| image.pullPolicy | string | `"IfNotPresent"` | |
| image.registry | string | `"docker.io"` | |
| image.repository | string | `"hapiproject/hapi"` | |
| image.pullPolicy | string | `"IfNotPresent"` | image pullPolicy to use |
| image.registry | string | `"docker.io"` | registry where the HAPI FHIR server image is hosted |
| image.repository | string | `"hapiproject/hapi"` | the path inside the repository |
| image.tag | string | `""` | defaults to `Chart.appVersion` |
| imagePullSecrets | list | `[]` | image pull secrets to use when pulling the image |
| ingress.annotations | object | `{}` | provide any additional annotations which may be required. Evaluated as a template. |
@@ -43,6 +47,9 @@ helm install --render-subchart-notes hapi-fhir-jpaserver hapifhir/hapi-fhir-jpas
| networkPolicy.explicitNamespacesSelector | object | `{}` | a Kubernetes LabelSelector to explicitly select namespaces from which ingress traffic could be allowed |
| nodeSelector | object | `{}` | node selector for the pod |
| podAnnotations | object | `{}` | annotations applied to the server pod |
| podDisruptionBudget.enabled | bool | `false` | Enable PodDisruptionBudget for the server pods. uses policy/v1/PodDisruptionBudget thus requiring k8s 1.21+ |
| podDisruptionBudget.maxUnavailable | string | `""` | maximum unavailable instances |
| podDisruptionBudget.minAvailable | int | `1` | minimum available instances |
| podSecurityContext | object | `{}` | pod security context |
| postgresql.containerSecurityContext.allowPrivilegeEscalation | bool | `false` | |
| postgresql.containerSecurityContext.capabilities.drop[0] | string | `"ALL"` | |
@@ -61,8 +68,8 @@ helm install --render-subchart-notes hapi-fhir-jpaserver hapifhir/hapi-fhir-jpas
| securityContext.readOnlyRootFilesystem | bool | `true` | |
| securityContext.runAsNonRoot | bool | `true` | |
| securityContext.runAsUser | int | `65532` | |
| service.port | int | `8080` | |
| service.type | string | `"ClusterIP"` | |
| service.port | int | `8080` | port where the server will be exposed at |
| service.type | string | `"ClusterIP"` | service type |
| startupProbe.failureThreshold | int | `10` | |
| startupProbe.initialDelaySeconds | int | `60` | |
| startupProbe.periodSeconds | int | `30` | |
@@ -70,5 +77,17 @@ helm install --render-subchart-notes hapi-fhir-jpaserver hapifhir/hapi-fhir-jpas
| startupProbe.timeoutSeconds | int | `30` | |
| tolerations | list | `[]` | pod tolerations |
## Development
To update the Helm chart when a new version of the `hapiproject/hapi` image is released, the [Chart.yaml](Chart.yaml)'s
`appVersion` and `version` fields need to be updated accordingly. Afterwards, re-generate the [README.md](README.md)
by running:
```sh
$ helm-docs
INFO[2021-11-20T12:38:04Z] Found Chart directories [charts/hapi-fhir-jpaserver]
INFO[2021-11-20T12:38:04Z] Generating README Documentation for chart /usr/src/app/charts/hapi-fhir-jpaserver
```
----------------------------------------------
Autogenerated from chart metadata using [helm-docs v1.5.0](https://github.com/norwoodj/helm-docs/releases/v1.5.0)

15
charts/hapi-fhir-jpaserver/README.md.gotmpl
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@@ -11,6 +11,21 @@ helm repo add hapifhir https://hapifhir.github.io/hapi-fhir-jpaserver-starter/
helm install --render-subchart-notes hapi-fhir-jpaserver hapifhir/hapi-fhir-jpaserver
```
> ⚠ By default, the included [PostgreSQL Helm chart](https://github.com/bitnami/charts/tree/master/bitnami/postgresql#upgrading)
> auto-generates a random password for the database which may cause problems when upgrading the chart (see [here for details](https://github.com/bitnami/charts/tree/master/bitnami/postgresql#upgrading)).
{{ template "chart.valuesSection" . }}
## Development
To update the Helm chart when a new version of the `hapiproject/hapi` image is released, the [Chart.yaml](Chart.yaml)'s
`appVersion` and `version` fields need to be updated accordingly. Afterwards, re-generate the [README.md](README.md)
by running:
```sh
$ helm-docs
INFO[2021-11-20T12:38:04Z] Found Chart directories [charts/hapi-fhir-jpaserver]
INFO[2021-11-20T12:38:04Z] Generating README Documentation for chart /usr/src/app/charts/hapi-fhir-jpaserver
```
{{ template "helm-docs.versionFooter" . }}

18
charts/hapi-fhir-jpaserver/templates/poddisruptionbudget.yaml Normal file
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@@ -0,0 +1,18 @@
{{- if .Values.podDisruptionBudget.enabled }}
kind: PodDisruptionBudget
apiVersion: policy/v1
metadata:
name: {{ include "hapi-fhir-jpaserver.fullname" . }}
labels:
{{- include "hapi-fhir-jpaserver.labels" . | nindent 4 }}
spec:
{{- if .Values.podDisruptionBudget.minAvailable }}
minAvailable: {{ .Values.podDisruptionBudget.minAvailable }}
{{- end }}
{{- if .Values.podDisruptionBudget.maxUnavailable }}
maxUnavailable: {{ .Values.podDisruptionBudget.maxUnavailable }}
{{- end }}
selector:
matchLabels:
{{- include "hapi-fhir-jpaserver.selectorLabels" . | nindent 6 }}
{{- end }}

20
charts/hapi-fhir-jpaserver/values.yaml
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@@ -2,13 +2,16 @@
replicaCount: 1
image:
# -- registry where the HAPI FHIR server image is hosted
registry: docker.io
# -- the path inside the repository
repository: hapiproject/hapi
# -- defaults to `Chart.appVersion`
tag: ""
# -- the flavor or variant of the image to use.
# appended to the image tag by `-`.
flavor: "distroless"
# -- image pullPolicy to use
pullPolicy: IfNotPresent
# -- image pull secrets to use when pulling the image
@@ -42,7 +45,9 @@ securityContext:
# service to expose the server
service:
# -- service type
type: ClusterIP
# -- port where the server will be exposed at
port: 8080
ingress:
@@ -157,3 +162,18 @@ networkPolicy:
# matchLabels:
# app.kubernetes.io/name: {{ $.Release.Name }}
allowedFrom: []
# -- extra environment variables to set on the server container
extraEnv:
[]
# - name: SPRING_FLYWAY_BASELINE_ON_MIGRATE
# value: "true"
podDisruptionBudget:
# -- Enable PodDisruptionBudget for the server pods.
# uses policy/v1/PodDisruptionBudget thus requiring k8s 1.21+
enabled: false
# -- minimum available instances
minAvailable: 1
# -- maximum unavailable instances
maxUnavailable: ""