Tracking Hapi 6.2-PRE releases (#408)

* Tracking branch for 6.1 pre-releases.

* Update to 6.1.0-PRE3-SNAPSHOT

* Adjust for hapi-fhir namespace changes and version

* Adjust version to include new hapi-fhir HSearch fast path feature

* Bump hapi PRE

* Update to PRE16

* Adjust configuration class name to HAPI-FHIR HSearch namespace consolidation.
Add commented out sample properties for lucene and elastic.
Move batch.job.enabled property under spring: prefix to have it considered.

* Adjust enumeration renaming

* Repoint FHIR 6.2.0-PRE1-SNAPSHOT

* Add missing Bean to starter configuration

* Update to hapi-fhir 6.2.0-PRE2-SNAPSHOT

* Update application-integrationtest.yaml and rename it as application.yaml to make test configuration independent of prod.

* Update to hapi-fhir 6.2.0-PRE5-SNAPSHOT

* Update dep

* Bump version fix failures

* Remove dead import

* Fix up

* remove batch refs

Co-authored-by: Michael Buckley <michael.buckley@smilecdr.com>
Co-authored-by: michaelabuckley <michaelabuckley@gmail.com>
Co-authored-by: juan.marchionatto <juan.marchionatto@smilecdr.com>
Co-authored-by: Tadgh <garygrantgraham@gmail.com>

src/main/java/ca/uhn/fhir/jpa/starter/common/FhirServerConfigCommon.java

@@ -137,7 +137,6 @@ public class FhirServerConfigCommon {
 		  daoConfig.setInlineResourceTextBelowSize(appProperties.getInline_resource_storage_below_size());
 	  }
 
-
 	  daoConfig.setStoreResourceInHSearchIndex(appProperties.getStore_resource_in_lucene_index_enabled());
 	  daoConfig.getModelConfig().setNormalizedQuantitySearchLevel(appProperties.getNormalized_quantity_search_level());
 	  daoConfig.getModelConfig().setIndexOnContainedResources(appProperties.getEnable_index_contained_resource());

src/main/java/ca/uhn/fhir/jpa/starter/common/FhirServerConfigDstu2.java

@@ -14,7 +14,10 @@ import org.springframework.context.annotation.Import;
 
 @Configuration
 @Conditional(OnDSTU2Condition.class)
-@Import({StarterJpaConfig.class, JpaDstu2Config.class})
+@Import({
+	JpaDstu2Config.class,
+	StarterJpaConfig.class
+})
 public class FhirServerConfigDstu2 {
 	@Bean
 	public ITermLoaderSvc termLoaderService(ITermDeferredStorageSvc theDeferredStorageSvc, ITermCodeSystemStorageSvc theCodeSystemStorageSvc) {

src/main/java/ca/uhn/fhir/jpa/starter/common/FhirServerConfigDstu3.java

@@ -10,8 +10,8 @@ import org.springframework.context.annotation.Import;
 @Configuration
 @Conditional(OnDSTU3Condition.class)
 @Import({
-	StarterJpaConfig.class,
 	JpaDstu3Config.class,
+	StarterJpaConfig.class,
 	StarterCqlDstu3Config.class,
 	ElasticsearchConfig.class})
 public class FhirServerConfigDstu3 {

src/main/java/ca/uhn/fhir/jpa/starter/common/FhirServerConfigR4.java

@@ -10,8 +10,8 @@ import org.springframework.context.annotation.Import;
 @Configuration
 @Conditional(OnR4Condition.class)
 @Import({
-	StarterJpaConfig.class,
 	JpaR4Config.class,
+	StarterJpaConfig.class,
 	StarterCqlR4Config.class,
 	ElasticsearchConfig.class
 })

src/main/java/ca/uhn/fhir/jpa/starter/common/StarterJpaConfig.java

@@ -12,9 +12,9 @@ import ca.uhn.fhir.context.support.IValidationSupport;
 import ca.uhn.fhir.interceptor.api.IInterceptorBroadcaster;
 import ca.uhn.fhir.jpa.api.IDaoRegistry;
 import ca.uhn.fhir.jpa.api.config.DaoConfig;
+import ca.uhn.fhir.jpa.api.config.ThreadPoolFactoryConfig;
 import ca.uhn.fhir.jpa.api.dao.DaoRegistry;
 import ca.uhn.fhir.jpa.api.dao.IFhirSystemDao;
-import ca.uhn.fhir.jpa.batch.config.NonPersistedBatchConfigurer;
 import ca.uhn.fhir.jpa.binary.interceptor.BinaryStorageInterceptor;
 import ca.uhn.fhir.jpa.binary.provider.BinaryAccessProvider;
 import ca.uhn.fhir.jpa.bulk.export.provider.BulkDataExportProvider;
@@ -26,6 +26,8 @@ import ca.uhn.fhir.jpa.dao.IFulltextSearchSvc;
 import ca.uhn.fhir.jpa.dao.mdm.MdmLinkDaoJpaImpl;
 import ca.uhn.fhir.jpa.dao.search.HSearchSortHelperImpl;
 import ca.uhn.fhir.jpa.dao.search.IHSearchSortHelper;
+import ca.uhn.fhir.jpa.dao.tx.HapiTransactionService;
+import ca.uhn.fhir.jpa.delete.ThreadSafeResourceDeleterSvc;
 import ca.uhn.fhir.jpa.graphql.GraphQLProvider;
 import ca.uhn.fhir.jpa.interceptor.CascadingDeleteInterceptor;
 import ca.uhn.fhir.jpa.interceptor.validation.RepositoryValidatingInterceptor;
@@ -62,14 +64,10 @@ import ca.uhn.fhir.validation.ResultSeverityEnum;
 import com.google.common.base.Strings;
 import com.google.common.collect.ImmutableList;
 import org.hl7.fhir.common.hapi.validation.support.CachingValidationSupport;
-import org.springframework.batch.core.configuration.annotation.BatchConfigurer;
 import org.springframework.beans.factory.annotation.Autowired;
 import org.springframework.beans.factory.config.ConfigurableListableBeanFactory;
 import org.springframework.boot.autoconfigure.condition.ConditionalOnProperty;
-import org.springframework.context.annotation.Bean;
-import org.springframework.context.annotation.Conditional;
-import org.springframework.context.annotation.Configuration;
-import org.springframework.context.annotation.Primary;
+import org.springframework.context.annotation.*;
 import org.springframework.core.env.ConfigurableEnvironment;
 import org.springframework.http.HttpHeaders;
 import org.springframework.orm.jpa.JpaTransactionManager;
@@ -83,6 +81,9 @@ import java.util.*;
 import static ca.uhn.fhir.jpa.starter.common.validation.IRepositoryValidationInterceptorFactory.ENABLE_REPOSITORY_VALIDATING_INTERCEPTOR;
 
 @Configuration
+@Import(
+	ThreadPoolFactoryConfig.class
+)
 public class StarterJpaConfig {
 
 	private static final org.slf4j.Logger ourLog = org.slf4j.LoggerFactory.getLogger(StarterJpaConfig.class);
@@ -103,10 +104,6 @@ public class StarterJpaConfig {
 		return ValidationSupportConfigUtil.newCachingValidationSupport(theJpaValidationSupportChain);
 	}
 
-	@Bean
-	public BatchConfigurer batchConfigurer() {
-		return new NonPersistedBatchConfigurer();
-	}
 
 	@Autowired
 	private ConfigurableEnvironment configurableEnvironment;
@@ -123,6 +120,7 @@ public class StarterJpaConfig {
 		return pagingProvider;
 	}
 
+
 	@Bean
 	public IResourceSupportedSvc resourceSupportedSvc(IDaoRegistry theDaoRegistry) {
 		return new DaoRegistryResourceSupportedSvc(theDaoRegistry);
@@ -150,7 +148,7 @@ public class StarterJpaConfig {
 
 	@Bean
 	@Primary
-	public JpaTransactionManager hapiTransactionManager(EntityManagerFactory entityManagerFactory) {
+	public JpaTransactionManager transactionManager(EntityManagerFactory entityManagerFactory) {
 		JpaTransactionManager retVal = new JpaTransactionManager();
 		retVal.setEntityManagerFactory(entityManagerFactory);
 		return retVal;
@@ -246,7 +244,7 @@ public class StarterJpaConfig {
 	}
 
 	@Bean
-	public RestfulServer restfulServer(IFhirSystemDao<?, ?> fhirSystemDao, AppProperties appProperties, DaoRegistry daoRegistry, Optional<MdmProviderLoader> mdmProviderProvider, IJpaSystemProvider jpaSystemProvider, ResourceProviderFactory resourceProviderFactory, DaoConfig daoConfig, ISearchParamRegistry searchParamRegistry, IValidationSupport theValidationSupport, DatabaseBackedPagingProvider databaseBackedPagingProvider, LoggingInterceptor loggingInterceptor, Optional<TerminologyUploaderProvider> terminologyUploaderProvider, Optional<SubscriptionTriggeringProvider> subscriptionTriggeringProvider, Optional<CorsInterceptor> corsInterceptor, IInterceptorBroadcaster interceptorBroadcaster, Optional<BinaryAccessProvider> binaryAccessProvider, BinaryStorageInterceptor binaryStorageInterceptor, IValidatorModule validatorModule, Optional<GraphQLProvider> graphQLProvider, BulkDataExportProvider bulkDataExportProvider, BulkDataImportProvider bulkDataImportProvider, ValueSetOperationProvider theValueSetOperationProvider, ReindexProvider reindexProvider, PartitionManagementProvider partitionManagementProvider, Optional<RepositoryValidatingInterceptor> repositoryValidatingInterceptor, IPackageInstallerSvc packageInstallerSvc) {
+	public RestfulServer restfulServer(IFhirSystemDao<?, ?> fhirSystemDao, AppProperties appProperties, DaoRegistry daoRegistry, Optional<MdmProviderLoader> mdmProviderProvider, IJpaSystemProvider jpaSystemProvider, ResourceProviderFactory resourceProviderFactory, DaoConfig daoConfig, ISearchParamRegistry searchParamRegistry, IValidationSupport theValidationSupport, DatabaseBackedPagingProvider databaseBackedPagingProvider, LoggingInterceptor loggingInterceptor, Optional<TerminologyUploaderProvider> terminologyUploaderProvider, Optional<SubscriptionTriggeringProvider> subscriptionTriggeringProvider, Optional<CorsInterceptor> corsInterceptor, IInterceptorBroadcaster interceptorBroadcaster, Optional<BinaryAccessProvider> binaryAccessProvider, BinaryStorageInterceptor binaryStorageInterceptor, IValidatorModule validatorModule, Optional<GraphQLProvider> graphQLProvider, BulkDataExportProvider bulkDataExportProvider, BulkDataImportProvider bulkDataImportProvider, ValueSetOperationProvider theValueSetOperationProvider, ReindexProvider reindexProvider, PartitionManagementProvider partitionManagementProvider, Optional<RepositoryValidatingInterceptor> repositoryValidatingInterceptor, IPackageInstallerSvc packageInstallerSvc, ThreadSafeResourceDeleterSvc theThreadSafeResourceDeleterSvc) {
 		RestfulServer fhirServer = new RestfulServer(fhirSystemDao.getContext());
 
 
@@ -352,7 +350,7 @@ public class StarterJpaConfig {
 		}
 
 		if (appProperties.getAllow_cascading_deletes()) {
-			CascadingDeleteInterceptor cascadingDeleteInterceptor = new CascadingDeleteInterceptor(fhirSystemDao.getContext(), daoRegistry, interceptorBroadcaster);
+			CascadingDeleteInterceptor cascadingDeleteInterceptor = new CascadingDeleteInterceptor(fhirSystemDao.getContext(), daoRegistry, interceptorBroadcaster, theThreadSafeResourceDeleterSvc);
 			fhirServer.registerInterceptor(cascadingDeleteInterceptor);
 		}
 

src/main/resources/application.yaml

@@ -39,16 +39,17 @@ spring:
   #      hibernate.cache.use_second_level_cache: false
   #      hibernate.cache.use_structured_entries: false
   #      hibernate.cache.use_minimal_puts: false
-  ###    These settings will enable fulltext search with lucene
-      hibernate.search.enabled: false
-  #      hibernate.search.backend.type: lucene
-  #      hibernate.search.backend.analysis.configurer: ca.uhn.fhir.jpa.search.HapiHSearchAnalysisConfigurers$HapiLuceneAnalysisConfigurer
-  #      hibernate.search.backend.directory.type: local-filesystem
-  #      hibernate.search.backend.directory.root: target/lucenefiles
-  #      hibernate.search.backend.lucene_version: lucene_current
-  batch:
-    job:
-      enabled: false
+  ###    These settings will enable fulltext search with lucene or elastic
+      hibernate.search.enabled: true
+  ### lucene parameters
+#      hibernate.search.backend.type: lucene
+#      hibernate.search.backend.analysis.configurer: ca.uhn.fhir.jpa.search.HapiHSearchAnalysisConfigurers$HapiLuceneAnalysisConfigurer
+#      hibernate.search.backend.directory.type: local-filesystem
+#      hibernate.search.backend.directory.root: target/lucenefiles
+#      hibernate.search.backend.lucene_version: lucene_current
+  ### elastic parameters ===> see also elasticsearch section below <===
+      hibernate.search.backend.type: elasticsearch
+      hibernate.search.backend.analysis.configurer: ca.uhn.fhir.jpa.search.HapiHSearchAnalysisConfigurers$HapiElasticAnalysisConfigurer
 hapi:
   fhir:
     ### This enables the swagger-ui at /fhir/swagger-ui/index.html as well as the /fhir/api-docs (see https://hapifhir.io/hapi-fhir/docs/server_plain/openapi.html)

src/test/java/ca/uhn/fhir/jpa/starter/ElasticsearchLastNR4IT.java

@@ -38,7 +38,6 @@ import org.testcontainers.elasticsearch.ElasticsearchContainer;
 @ExtendWith(SpringExtension.class)
 @SpringBootTest(webEnvironment = SpringBootTest.WebEnvironment.RANDOM_PORT, classes = Application.class, properties =
   {
-    "spring.batch.job.enabled=false",
     "spring.datasource.url=jdbc:h2:mem:dbr4",
     "hapi.fhir.fhir_version=r4",
     "hapi.fhir.lastn_enabled=true",

src/test/java/ca/uhn/fhir/jpa/starter/ExampleServerDstu2IT.java

@@ -18,7 +18,6 @@ import static org.junit.jupiter.api.Assertions.assertEquals;
 @ExtendWith(SpringExtension.class)
 @SpringBootTest(webEnvironment = SpringBootTest.WebEnvironment.RANDOM_PORT, classes = Application.class, properties =
   {
-     "spring.batch.job.enabled=false",
      "hapi.fhir.fhir_version=dstu2",
      "spring.datasource.url=jdbc:h2:mem:dbr2",
   })

src/test/java/ca/uhn/fhir/jpa/starter/ExampleServerDstu3IT.java

@@ -39,7 +39,6 @@ import static org.junit.jupiter.api.Assertions.assertEquals;
 @ExtendWith(SpringExtension.class)
 @SpringBootTest(webEnvironment = SpringBootTest.WebEnvironment.RANDOM_PORT, classes = Application.class, properties =
   {
-     "spring.batch.job.enabled=false",
      "spring.datasource.url=jdbc:h2:mem:dbr3",
      "hapi.fhir.cql_enabled=true",
      "hapi.fhir.fhir_version=dstu3",

src/test/java/ca/uhn/fhir/jpa/starter/ExampleServerR4IT.java

@@ -31,7 +31,6 @@ import static org.junit.jupiter.api.Assertions.assertEquals;
 import static org.junit.jupiter.api.Assertions.assertNotNull;
 
 @SpringBootTest(webEnvironment = SpringBootTest.WebEnvironment.RANDOM_PORT, classes = Application.class, properties = {
-		"spring.batch.job.enabled=false",
 		"spring.datasource.url=jdbc:h2:mem:dbr4",
 		"hapi.fhir.enable_repository_validating_interceptor=true",
 		"hapi.fhir.fhir_version=r4",

src/test/java/ca/uhn/fhir/jpa/starter/ExampleServerR5IT.java

@@ -34,7 +34,6 @@ import org.springframework.test.context.junit.jupiter.SpringExtension;
 @ExtendWith(SpringExtension.class)
 @SpringBootTest(webEnvironment = SpringBootTest.WebEnvironment.RANDOM_PORT, classes = Application.class, properties =
   {
-     "spring.batch.job.enabled=false",
      "spring.datasource.url=jdbc:h2:mem:dbr5",
      "hapi.fhir.fhir_version=r5",
      "hapi.fhir.subscription.websocket_enabled=true",
@@ -80,7 +79,7 @@ public class ExampleServerR5IT {
     subscription.getContained().add(topic);
     subscription.setTopic("#1");
     subscription.setReason("Monitor new neonatal function (note, age will be determined by the monitor)");
-    subscription.setStatus(Enumerations.SubscriptionState.REQUESTED);
+    subscription.setStatus(Enumerations.SubscriptionStatusCodes.REQUESTED);
     subscription.getChannelType()
       .setSystem("http://terminology.hl7.org/CodeSystem/subscription-channel-type")
       .setCode("websocket");

src/test/java/ca/uhn/fhir/jpa/starter/MultitenantServerR4IT.java

@@ -20,7 +20,6 @@ import static org.junit.jupiter.api.Assertions.assertEquals;
 @ExtendWith(SpringExtension.class)
 @SpringBootTest(webEnvironment = SpringBootTest.WebEnvironment.RANDOM_PORT, classes = Application.class, properties =
   {
-    "spring.batch.job.enabled=false",
     "spring.datasource.url=jdbc:h2:mem:dbr4-mt",
     "hapi.fhir.fhir_version=r4",
     "hapi.fhir.subscription.websocket_enabled=true",

src/test/resources/application-integrationtest.yaml

@@ -1,108 +0,0 @@
-spring:
-  datasource:
-    url: 'jdbc:h2:file:./target/database/h2'
-    username: sa
-    password: null
-    driverClassName: org.h2.Driver
-    max-active: 15
-  profiles:
-    ### This is the FHIR version. Choose between, dstu2, dstu3, r4 or r5
-    active: r4
-
-hapi:
-  fhir:
-    #supported_resource_types:
-    #  - Patient
-    #  - Observation
-#    allow_cascading_deletes: true
-#    allow_contains_searches: true
-#    allow_external_references: true
-#    allow_multiple_delete: true
-#    allow_override_default_search_params: true
-#    allow_placeholder_references: true
-#    auto_create_placeholder_reference_targets: false
-#    cql_enabled: false
-#    default_encoding: JSON
-#    default_pretty_print: true
-#    default_page_size: 20
-#    delete_expunge_enabled: true
-#    enable_index_missing_fields: false
-#    enforce_referential_integrity_on_delete: false
-#    enforce_referential_integrity_on_write: false
-#    etag_support_enabled: true
-#    expunge_enabled: true
-#    daoconfig_client_id_strategy: null
-#    fhirpath_interceptor_enabled: false
-#    filter_search_enabled: true
-#    graphql_enabled: true
-#    local_base_urls:
-#      - http://hapi.fhir.org/baseR4
-    #partitioning:
-    #  cross_partition_reference_mode: true
-    #  multitenancy_enabled: true
-    #  partitioning_include_in_search_hashes: true
-    #cors:
-    #  allow_Credentials: true
-      # Supports multiple, comma separated allowed origin entries
-      # cors.allowed_origin=http://localhost:8080,https://localhost:8080,https://fhirtest.uhn.ca
-    #  allowed_origin:
-    #    - '*'
-
-#    logger:
-#      error_format: 'ERROR - ${requestVerb} ${requestUrl}'
-#      format: >-
-#        Path[${servletPath}] Source[${requestHeader.x-forwarded-for}]
-#        Operation[${operationType} ${operationName} ${idOrResourceName}]
-#        UA[${requestHeader.user-agent}] Params[${requestParameters}]
-#        ResponseEncoding[${responseEncodingNoDefault}]
-#      log_exceptions: true
-#      name: fhirtest.access
-#    max_binary_size: 104857600
-#    max_page_size: 200
-#    retain_cached_searches_mins: 60
-#    reuse_cached_search_results_millis: 60000
-    tester:
-      -
-          id: home
-          name: Local Tester
-          server_address: 'http://localhost:8080/hapi-fhir-jpaserver/fhir'
-          refuse_to_fetch_third_party_urls: false
-          fhir_version: R4
-      -
-          id: global
-          name: Global Tester
-          server_address: "http://hapi.fhir.org/baseR4"
-          refuse_to_fetch_third_party_urls: false
-          fhir_version: R4
-#    validation:
-#      requests_enabled: true
-#      responses_enabled: true
-#    binary_storage_enabled: true
-#    bulk_export_enabled: true
-#    partitioning_multitenancy_enabled:
-#    subscription:
-#      resthook_enabled: false
-#      websocket_enabled: false
-#      email:
-#        from: some@test.com
-#        host: google.com
-#        port:
-#        username:
-#        password:
-#        auth:
-#        startTlsEnable:
-#        startTlsRequired:
-#        quitWait:
-
-
-#
-#elasticsearch:
-#  debug:
-#    pretty_print_json_log: false
-#    refresh_after_write: false
-#  enabled: false
-#  password: SomePassword
-#  required_index_status: YELLOW
-#  rest_url: 'http://localhost:9200'
-#  schema_management_strategy: CREATE
-#  username: SomeUsername

src/test/resources/application.yaml

@@ -0,0 +1,186 @@
+spring:
+  main:
+    allow-circular-references: true
+    #allow-bean-definition-overriding: true
+  flyway:
+    enabled: false
+    check-location: false
+    baselineOnMigrate: true
+  datasource:
+    url: jdbc:h2:mem:test_mem
+    username: sa
+    password: null
+    driverClassName: org.h2.Driver
+    max-active: 15
+
+    # database connection pool size
+    hikari:
+      maximum-pool-size: 10
+  jpa:
+    properties:
+      hibernate.format_sql: false
+      hibernate.show_sql: false
+      #Hibernate dialect is automatically detected except Postgres and H2.
+      #If using H2, then supply the value of ca.uhn.fhir.jpa.model.dialect.HapiFhirH2Dialect
+      #If using postgres, then supply the value of ca.uhn.fhir.jpa.model.dialect.HapiFhirPostgres94Dialect
+
+      hibernate.dialect: ca.uhn.fhir.jpa.model.dialect.HapiFhirH2Dialect
+      #      hibernate.hbm2ddl.auto: update
+      #      hibernate.jdbc.batch_size: 20
+      #      hibernate.cache.use_query_cache: false
+      #      hibernate.cache.use_second_level_cache: false
+      #      hibernate.cache.use_structured_entries: false
+      #      hibernate.cache.use_minimal_puts: false
+      ###    These settings will enable fulltext search with lucene or elastic
+      hibernate.search.enabled: false
+  ### lucene parameters
+  #      hibernate.search.backend.type: lucene
+  #      hibernate.search.backend.analysis.configurer: ca.uhn.fhir.jpa.search.HapiHSearchAnalysisConfigurers$HapiLuceneAnalysisConfigurer
+  #      hibernate.search.backend.directory.type: local-filesystem
+  #      hibernate.search.backend.directory.root: target/lucenefiles
+  #      hibernate.search.backend.lucene_version: lucene_current
+  ### elastic parameters ===> see also elasticsearch section below <===
+#      hibernate.search.backend.type: elasticsearch
+#      hibernate.search.backend.analysis.configurer: ca.uhn.fhir.jpa.search.HapiHSearchAnalysisConfigurers$HapiElasticAnalysisConfigurer
+
+hapi:
+  fhir:
+    ### This enables the swagger-ui at /fhir/swagger-ui/index.html as well as the /fhir/api-docs (see https://hapifhir.io/hapi-fhir/docs/server_plain/openapi.html)
+    openapi_enabled: true
+    ### This is the FHIR version. Choose between, DSTU2, DSTU3, R4 or R5
+    fhir_version: R4
+    ### enable to use the ApacheProxyAddressStrategy which uses X-Forwarded-* headers
+    ### to determine the FHIR server address
+    #   use_apache_address_strategy: false
+    ### forces the use of the https:// protocol for the returned server address.
+    ### alternatively, it may be set using the X-Forwarded-Proto header.
+    #   use_apache_address_strategy_https: false
+    ### enable to set the Server URL
+    #    server_address: http://hapi.fhir.org/baseR4
+    #    defer_indexing_for_codesystems_of_size: 101
+    #    install_transitive_ig_dependencies: true
+    #    implementationguides:
+    ###    example from registry (packages.fhir.org)
+    #      swiss:
+    #        name: swiss.mednet.fhir
+    #        version: 0.8.0
+    #      example not from registry
+    #      ips_1_0_0:
+    #        url: https://build.fhir.org/ig/HL7/fhir-ips/package.tgz
+    #        name: hl7.fhir.uv.ips
+    #        version: 1.0.0
+    #    supported_resource_types:
+    #      - Patient
+    #      - Observation
+    #    allow_cascading_deletes: true
+    #    allow_contains_searches: true
+    #    allow_external_references: true
+    #    allow_multiple_delete: true
+    #    allow_override_default_search_params: true
+    #    auto_create_placeholder_reference_targets: false
+    #    cql_enabled: true
+    #    default_encoding: JSON
+    #    default_pretty_print: true
+    #    default_page_size: 20
+    #    delete_expunge_enabled: true
+    #    enable_repository_validating_interceptor: false
+    #    enable_index_missing_fields: false
+    #    enable_index_of_type: true
+    #    enable_index_contained_resource: false
+    ###  !!Extended Lucene/Elasticsearch Indexing is still a experimental feature, expect some features (e.g. _total=accurate) to not work as expected!!
+    ###  more information here: https://hapifhir.io/hapi-fhir/docs/server_jpa/elastic.html
+    advanced_lucene_indexing: false
+    #    enforce_referential_integrity_on_delete: false
+    # This is an experimental feature, and does not fully support _total and other FHIR features.
+    #    enforce_referential_integrity_on_delete: false
+    #    enforce_referential_integrity_on_write: false
+    #    etag_support_enabled: true
+    #    expunge_enabled: true
+    #    daoconfig_client_id_strategy: null
+    #    client_id_strategy: ALPHANUMERIC
+    #    fhirpath_interceptor_enabled: false
+    #    filter_search_enabled: true
+    #    graphql_enabled: true
+    #    narrative_enabled: true
+    #    mdm_enabled: true
+    #    local_base_urls:
+    #      - https://hapi.fhir.org/baseR4
+    mdm_enabled: false
+    #    partitioning:
+    #      allow_references_across_partitions: false
+    #      partitioning_include_in_search_hashes: false
+    #cors:
+    #  allow_Credentials: true
+      # These are allowed_origin patterns, see: https://docs.spring.io/spring-framework/docs/current/javadoc-api/org/springframework/web/cors/CorsConfiguration.html#setAllowedOriginPatterns-java.util.List-
+    #  allowed_origin:
+    #    - '*'
+
+    # Search coordinator thread pool sizes
+    search-coord-core-pool-size: 20
+    search-coord-max-pool-size: 100
+    search-coord-queue-capacity: 200
+
+    # Threadpool size for BATCH'ed GETs in a bundle.
+    #    bundle_batch_pool_size: 10
+    #    bundle_batch_pool_max_size: 50
+
+    #    logger:
+    #      error_format: 'ERROR - ${requestVerb} ${requestUrl}'
+    #      format: >-
+    #        Path[${servletPath}] Source[${requestHeader.x-forwarded-for}]
+    #        Operation[${operationType} ${operationName} ${idOrResourceName}]
+    #        UA[${requestHeader.user-agent}] Params[${requestParameters}]
+    #        ResponseEncoding[${responseEncodingNoDefault}]
+    #      log_exceptions: true
+    #      name: fhirtest.access
+    #    max_binary_size: 104857600
+    #    max_page_size: 200
+    #    retain_cached_searches_mins: 60
+    #    reuse_cached_search_results_millis: 60000
+    tester:
+      home:
+        name: Local Tester
+        server_address: 'http://localhost:8080/fhir'
+        refuse_to_fetch_third_party_urls: false
+        fhir_version: R4
+      global:
+        name: Global Tester
+        server_address: "http://hapi.fhir.org/baseR4"
+        refuse_to_fetch_third_party_urls: false
+        fhir_version: R4
+#    validation:
+#      requests_enabled: true
+#      responses_enabled: true
+#    binary_storage_enabled: true
+#    bulk_export_enabled: true
+#    subscription:
+#      resthook_enabled: true
+#      websocket_enabled: false
+#      email:
+#        from: some@test.com
+#        host: google.com
+#        port:
+#        username:
+#        password:
+#        auth:
+#        startTlsEnable:
+#        startTlsRequired:
+#        quitWait:
+#    lastn_enabled: true
+#    store_resource_in_lucene_index_enabled: true
+###  This is configuration for normalized quantity serach level default is 0
+###   0: NORMALIZED_QUANTITY_SEARCH_NOT_SUPPORTED - default
+###   1: NORMALIZED_QUANTITY_STORAGE_SUPPORTED
+###   2: NORMALIZED_QUANTITY_SEARCH_SUPPORTED
+#    normalized_quantity_search_level: 2
+#elasticsearch:
+#  debug:
+#    pretty_print_json_log: false
+#    refresh_after_write: false
+#  enabled: false
+#  password: SomePassword
+#  required_index_status: YELLOW
+#  rest_url: 'localhost:9200'
+#  protocol: 'http'
+#  schema_management_strategy: CREATE
+#  username: SomeUsername